Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq194543 100 2e-16
seq160375 100 2e-16
seq181690 98.7 7e-16
seq194317 93.3 3e-14
seq156113 89.7 3e-13
seq176217 84.2 1e-11
>seq194543
Length=10949
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| || ||| |||||| |||||||||||||||| ||| || || |||| || | |||
Sbjct 3228 TGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGCGAGCGTACGGCCGTCCTCGAGCTGT 3169
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
||||| ||||| || | |||||||||||| | || | ||||| || || || ||
Sbjct 3168 TTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTT- 3110
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
|| || || | ||| | || ||| ||| || || | ||||| || ||||| ||
Sbjct 3109 TGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCAGT 3050
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
|| ||||| || |||||||||||
Sbjct 3049 TAGGGTTTTCACGAAGATCTGCAT 3026
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| ||||| | | ||||| ||| | || ||| || || || || ||||| |
Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || | || ||||| || || ||||||||||||||||||||||||||| | ||
Sbjct 3648 AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGA 3589
Query 33643 ACACCTTCTTTGTC 33656
| |||||||| ||
Sbjct 3588 ATCCCTTCTTTATC 3575
Score = 82.4 bits (90), Expect = 5e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| |||||| || || || ||||| ||||||| | || || | || |||| |||
Sbjct 3456 TGAAGAGTGGATTCCTTCTGGATGTTATAATCGGCTAAAGTCCGCCCATCTTCCAGTTGC 3397
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
||||| || || || | | |||||||||| | || | |||||| ||||| ||||||
Sbjct 3396 TTTCCAGCGAAGATTAGCCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTC 3337
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
|| | | | ||| | |||||| ||| || || | ||||||||| || || ||
Sbjct 3336 GCCTTGA-CGTTGTCGATAGTGTCGGAGCTTTCGACCTCGAGCGTGATCGTCTTGCCAGT 3278
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
| ||||| || |||||||||||
Sbjct 3277 CAGGGTTTTGACGAAGATCTGCAT 3254
>seq160375
Length=3367
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | |||||| || || ||| ||| || || ||||||||||| |
Sbjct 1153 ACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 1212
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || || |||| |||||||| ||||| || ||||| | | |||||| ||| | ||
Sbjct 1213 CAAGGTACGGCCGTCCTCCAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGG 1272
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701
| || || ||||| |||||| |||| || | ||||||| ||||||
Sbjct 1273 GATTCCCTCCTTGTCTTGAATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCAC 1332
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | ||||| ||||||||||||||
Sbjct 1333 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 1380
>seq181690
Length=5866
Score = 98.7 bits (108), Expect = 7e-16
Identities = 171/244 (70%), Gaps = 10/244 (4%)
Strand=Plus/Plus
Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570
|||||| || ||||| | | ||| | |||||| || || || ||| || || |||
Sbjct 2723 AAAATCTGCATCCCACCACGAAGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATG 2782
Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630
||||| || | | || | | | || ||||||||||| || ||||| ||||| | ||||
Sbjct 2783 TTGTAGTCAGCTAAAGTCCTTCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGC 2842
Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689
||||| |||| | ||| || ||||| |||||| || | || | ||| | |||||
Sbjct 2843 TGATCCGGCGGAATACCCTCCTTGTCCTGAATTTT-TGCCTTTACGTTGTCAATTGTGTC 2901
Query 33690 GCTTGA---TTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746
||| ||||| || | ||||| || || ||||| || || || |||||||| ||
Sbjct 2902 ---TGAACTCTCCACCTCCAAAGTGATAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTG 2958
Query 33747 CATA 33750
||||
Sbjct 2959 CATA 2962
>seq194317
Length=10706
Score = 93.3 bits (102), Expect = 3e-14
Identities = 142/200 (71%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || |||||||| |||| || || | | |||| |||| || || ||||| ||
Sbjct 1342 TCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAG 1401
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
|| | ||||| || ||| | || | ||||||||||| || || || || ||||
Sbjct 1402 ATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTT-TGCTTTGACATT 1460
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
||| | |||||| ||||| || || | || || ||||| || ||||| ||||| ||
Sbjct 1461 GTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGAC 1520
Query 33738 AAAGATCTGCATAGTTGGTG 33757
||||||||||| | ||||
Sbjct 1521 GAAGATCTGCATCTTCGGTG 1540
>seq156113
Length=3066
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| ||||| | | ||||| ||| | || ||| || || ||||| ||||| |
Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || | || |||||||| || || || |||||||| ||||||||||| | ||
Sbjct 1052 AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGA 993
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| ||||| | | |||| ||| | || ||| || ||
Sbjct 992 ATCCCTTCCTTGTCTTGGATTTT-GGCCTTTACATTGTCGATAGTATCGGAGCTCTCGAC 934
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| ||||| || |||| ||||| || |||||||||||
Sbjct 933 TTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886
>seq176217
Length=4970
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | ||||||||| || ||| || ||||| || ||||||||||
Sbjct 2520 CCACCTCTGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGGCA 2579
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || |||| || | ||| || ||||||||||| | | ||||| ||| | ||
Sbjct 2580 AGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGGGA 2639
Query 33643 ACACCTTCTTTGTC 33656
| ||||| |||||
Sbjct 2640 ATTCCTTCCTTGTC 2653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 327901970765760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |