Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq194543 100 2e-16 seq160375 100 2e-16 seq181690 98.7 7e-16 seq194317 93.3 3e-14 seq156113 89.7 3e-13 seq176217 84.2 1e-11 >seq194543 Length=10949 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| |||||| |||||||||||||||| ||| || || |||| || | ||| Sbjct 3228 TGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGCGAGCGTACGGCCGTCCTCGAGCTGT 3169 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| ||||| || | |||||||||||| | || | ||||| || || || || Sbjct 3168 TTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTT- 3110 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || || | ||| | || ||| ||| || || | ||||| || ||||| || Sbjct 3109 TGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCAGT 3050 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || ||||||||||| Sbjct 3049 TAGGGTTTTCACGAAGATCTGCAT 3026 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||| | | ||||| ||| | || ||| || || || || ||||| | Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||| || || ||||||||||||||||||||||||||| | || Sbjct 3648 AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGA 3589 Query 33643 ACACCTTCTTTGTC 33656 | |||||||| || Sbjct 3588 ATCCCTTCTTTATC 3575 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| || || || ||||| ||||||| | || || | || |||| ||| Sbjct 3456 TGAAGAGTGGATTCCTTCTGGATGTTATAATCGGCTAAAGTCCGCCCATCTTCCAGTTGC 3397 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| || || || | | |||||||||| | || | |||||| ||||| |||||| Sbjct 3396 TTTCCAGCGAAGATTAGCCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTC 3337 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | | | ||| | |||||| ||| || || | ||||||||| || || || Sbjct 3336 GCCTTGA-CGTTGTCGATAGTGTCGGAGCTTTCGACCTCGAGCGTGATCGTCTTGCCAGT 3278 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || ||||||||||| Sbjct 3277 CAGGGTTTTGACGAAGATCTGCAT 3254 >seq160375 Length=3367 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||| || || ||| ||| || || ||||||||||| | Sbjct 1153 ACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 1212 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| |||||||| ||||| || ||||| | | |||||| ||| | || Sbjct 1213 CAAGGTACGGCCGTCCTCCAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGG 1272 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | || || ||||| |||||| |||| || | ||||||| |||||| Sbjct 1273 GATTCCCTCCTTGTCTTGAATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCAC 1332 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| |||||||||||||| Sbjct 1333 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 1380 >seq181690 Length=5866 Score = 98.7 bits (108), Expect = 7e-16 Identities = 171/244 (70%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| | |||||| || || || ||| || || ||| Sbjct 2723 AAAATCTGCATCCCACCACGAAGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATG 2782 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | | || | | | || ||||||||||| || ||||| ||||| | |||| Sbjct 2783 TTGTAGTCAGCTAAAGTCCTTCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGC 2842 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| |||| | ||| || ||||| |||||| || | || | ||| | ||||| Sbjct 2843 TGATCCGGCGGAATACCCTCCTTGTCCTGAATTTT-TGCCTTTACGTTGTCAATTGTGTC 2901 Query 33690 GCTTGA---TTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| ||||| || | ||||| || || ||||| || || || |||||||| || Sbjct 2902 ---TGAACTCTCCACCTCCAAAGTGATAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTG 2958 Query 33747 CATA 33750 |||| Sbjct 2959 CATA 2962 >seq194317 Length=10706 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| || || | | |||| |||| || || ||||| || Sbjct 1342 TCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAG 1401 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||| || ||| | || | ||||||||||| || || || || |||| Sbjct 1402 ATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTT-TGCTTTGACATT 1460 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | |||||| ||||| || || | || || ||||| || ||||| ||||| || Sbjct 1461 GTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGAC 1520 Query 33738 AAAGATCTGCATAGTTGGTG 33757 ||||||||||| | |||| Sbjct 1521 GAAGATCTGCATCTTCGGTG 1540 >seq156113 Length=3066 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||| | | ||||| ||| | || ||| || || ||||| ||||| | Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||||||| || || || |||||||| ||||||||||| | || Sbjct 1052 AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGA 993 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| | | |||| ||| | || ||| || || Sbjct 992 ATCCCTTCCTTGTCTTGGATTTT-GGCCTTTACATTGTCGATAGTATCGGAGCTCTCGAC 934 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || |||| ||||| || ||||||||||| Sbjct 933 TTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886 >seq176217 Length=4970 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||||||| || ||| || ||||| || |||||||||| Sbjct 2520 CCACCTCTGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGGCA 2579 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | ||| || ||||||||||| | | ||||| ||| | || Sbjct 2580 AGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGGGA 2639 Query 33643 ACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 2640 ATTCCTTCCTTGTC 2653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327901970765760