Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq198569 255 2e-63 seq200167 123 7e-24 seq197886 116 1e-21 seq198258 109 2e-19 seq197706 109 2e-19 seq198484 95.1 4e-15 seq197639 87.8 5e-13 seq180125 84.2 6e-12 >seq198569 Length=8129 Score = 255 bits (282), Expect = 2e-63 Identities = 334/455 (73%), Gaps = 18/455 (4%) Strand=Plus/Plus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||| ||||| || |||||||||||||| | || | || ||| | ||||||||| ||| Sbjct 2779 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGT 2838 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || ||||| |||||||| || |||| || ||||| | |||| || |||||| Sbjct 2839 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTATCCAATTGGTC 2897 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | || || || || |||| |||||| | || ||||| ||||| ||||||| |||| | | Sbjct 2898 AAGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCG 2957 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCC-GTTCCACATGCTTGGTGTGGCTGGT 20068 ||||||| || || || || || || |||||||| ||| | ||| | ||||| |||||| Sbjct 2958 TATTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGT 3017 Query 20069 GTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTG 20128 ||||| | || || ||||||| ||| ||||| ||||| |||| || | || | Sbjct 3018 GTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC-CTTGGTAGCT----TCTAATC 3072 Query 20129 CGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAG 20188 | || || || | | || ||| || |||| ||||| ||||| || || Sbjct 3073 AGGGAAACCAC---CCCGCTAA---TGAA----GGGTACAGATTTGGTCAAGAGGAGGAA 3122 Query 20189 ACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCT 20248 || ||||| || ||||| ||||||||||| ||||| || |||||||||||||| ||| | Sbjct 3123 ACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 3182 Query 20249 TTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283 |||||||| |||||| |||| || ||||| || Sbjct 3183 TTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq200167 Length=15642 Score = 123 bits (136), Expect = 7e-24 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 19966 TGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACA 20025 || ||||||| | || ||||| ||||| ||||||| ||| |||||||| || || || Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 20026 TAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACT 20085 ||||| || |||||||| || |||||| | ||||| ||||||||||| ||||| || || Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 20086 ATTCAGTGCGATGCACGGTTC 20106 |||||| | ||||| ||||| Sbjct 10706 GTTCAGTACTATGCATGGTTC 10686 >seq197886 Length=1258 Score = 116 bits (128), Expect = 1e-21 Identities = 190/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 20220 TTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCC 20279 |||| || |||||||||||||| | | |||| || ||| | || | |||| ||||||| Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391 Query 20280 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGT 20339 | ||| ||||| || |||| || | |||| || || || || |||| Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451 Query 20340 TTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTG 20399 | || || || ||||| || || ||||| ||| | | || || | |||||||| ||| Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTA 511 Query 20400 ATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTG--AGGTG----ATGCATG 20453 | ||||||||||| || | || | |||||| || ||| | || || || |||| Sbjct 512 AGACTTGGGCTGATATCATTAACCATGCTAA-CTTTGGTACGAAAGTTGGAGTATTCATG 570 Query 20454 AACGGAATGCTCATAACTTCCCACTTGACCT 20484 |||| ||||||||||||||||| || ||||| Sbjct 571 AACGTAATGCTCATAACTTCCCTCTAGACCT 601 >seq198258 Length=3934 Score = 109 bits (120), Expect = 2e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 19970 ATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAAC 20029 |||||| |||| || || |||| ||||||| | || | |||||| | || || || || Sbjct 3146 ATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTGAGCACAAT 3205 Query 20030 ATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTC 20089 || || | ||||| || |||||| | ||||| |||||||||||||| || || ||||| Sbjct 3206 ATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCTATTT 3265 Query 20090 AGTGCGATGCACGGTTCGCTTGT 20112 ||||| ||||| ||||| |||| Sbjct 3266 AGTGCTATGCATGGTTCCTTTGT 3288 >seq197706 Length=393 Score = 109 bits (120), Expect = 2e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| || |||||||| ||||| ||||| || |||||||| || || ||||| || Sbjct 144 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTT 203 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCA 19715 || || || |||||||| ||||| || || || || ||| | |||| | | ||| Sbjct 204 TCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCA 263 Query 19716 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCT 19775 || || || | ||||| ||||| || ||||||||| || ||||||||||| | | Sbjct 264 --GCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTAT 321 Query 19776 ACAACGGGGGACC 19788 |||| || || || Sbjct 322 ACAATGGCGGTCC 334 >seq198484 Length=6561 Score = 95.1 bits (104), Expect = 4e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 20348 AACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGG 20407 || |||||||| || ||||| || | | || | | || ||||| ||| |||| ||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 20408 GCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCAT 20467 || || || | || |||||||| || || | || || ||||||||||| ||||||||| Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 20468 AACTTCCCACTTGACCTTGC 20487 |||||||| || ||||| || Sbjct 6354 AACTTCCCTCTAGACCTAGC 6373 >seq197639 Length=228 Score = 87.8 bits (96), Expect = 5e-13 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446 || ||||| ||| |||| ||||| || || | || |||||||| || || | || || Sbjct 210 GGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTT 151 Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||||||||||| ||||||||||||||||| || ||||| || Sbjct 150 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 110 >seq180125 Length=5570 Score = 84.2 bits (92), Expect = 6e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| || || ||||| ||| | || | ||||||| |||| ||||||||||| ||| Sbjct 919 GGTTACAGATTCGGTCAAGAGGAATAAACTTCTAACATCATAGCAGCTCATGGTTATTTT 978 Query 20222 GGACGTTTGATCTTCCAATACGCT 20245 || || |||||||||||||| ||| Sbjct 979 GGCCGCTTGATCTTCCAATATGCT 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148474972829574