Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq198569 226 8e-55 seq197886 122 3e-23 seq197706 107 6e-19 seq198258 98.7 3e-16 seq198484 96.9 1e-15 seq197639 93.3 1e-14 seq180125 89.7 2e-13 >seq198569 Length=8129 Score = 226 bits (250), Expect = 8e-55 Identities = 338/477 (71%), Gaps = 16/477 (3%) Strand=Plus/Plus Query 28936 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 28995 |||||| | |||| || | ||| ||||| || |||||||||||||| | || | Sbjct 2756 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTG 2815 Query 28996 GGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTT 29055 || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| ||| Sbjct 2816 GGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2875 Query 29056 TTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCA 29115 ||| | |||| ||| | |||||||| |||| || | ||||||| | || || || Sbjct 2876 TTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCT 2935 Query 29116 GGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCC-GTT 29174 || || ||||||| |||| | || ||||| || || || || || || |||||||| || Sbjct 2936 GGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCACCCATTT 2995 Query 29175 CCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 | | ||| | || || ||||| || || | ||||| ||||| | ||| ||||| ||||| Sbjct 2996 CGATATGTTAGGTGTAGCTGGTGTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC 3055 Query 29235 GCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTA 29294 |||| | |||| | | | ||| || | | | || | || || Sbjct 3056 -CTTG-------GTAGCTTCT------AATCAGGGAAACCACCCCGC-TAATGAAGGGTA 3100 Query 29295 CAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACG 29354 || ||||| ||||| || || |||||||| || ||||| ||||| ||||| ||||| || Sbjct 3101 CAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCG 3160 Query 29355 TTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGC 29411 |||||||||||||||||| |||||| || |||||| |||| || ||||| || Sbjct 3161 ATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq197886 Length=1258 Score = 122 bits (134), Expect = 3e-23 Identities = 190/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 29348 TTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCC 29407 |||| || |||||||||||||||| | |||| |||||| | || | |||| ||||||| Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391 Query 29408 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGT 29467 | ||| ||||| || |||| || | |||| || || || || |||| Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451 Query 29468 TTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTA 29527 | || || || ||||| || || ||||| || | | || || | |||||||| |||| Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTA 511 Query 29528 ATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGG------CTTTGAAGTAATGCATG 29581 | |||||||||||| | | || | |||||| | || ||| ||| || |||| Sbjct 512 AGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGT-ATTCATG 570 Query 29582 AGCGTAATGCTCATAACTTCCCACTTGATCT 29612 | |||||||||||||||||||| || || || Sbjct 571 AACGTAATGCTCATAACTTCCCTCTAGACCT 601 >seq197706 Length=393 Score = 107 bits (118), Expect = 6e-19 Identities = 176/252 (70%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| || |||||||| || || ||||| || |||||||| || || |||||||| Sbjct 144 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTT 203 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCA 28843 |||| ||| || ||||| ||||| || || || || ||| | | || | | ||| Sbjct 204 TCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCA 263 Query 28844 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 28903 || || || | ||||| ||||| || ||||||||| || ||||||||||| | | Sbjct 264 --GCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTAT 321 Query 28904 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACA 28963 |||| || || || | | || | || | |||||| | |||| || | ||| | Sbjct 322 ACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATA 381 Query 28964 TGGGACGCGAGT 28975 |||| || |||| Sbjct 382 TGGGTCGTGAGT 393 >seq198258 Length=3934 Score = 98.7 bits (108), Expect = 3e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 29097 GATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAA 29156 ||||||| |||| || || | || ||||||| | || | || ||| | || || || || Sbjct 3145 GATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTGAGCACAA 3204 Query 29157 CATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATT 29216 || || | ||||| || |||||| | || || ||||| || ||||| ||||| ||||| Sbjct 3205 TATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCTATT 3264 Query 29217 TAGTGCAATGCACGGTTCGCTTGT 29240 |||||| ||||| ||||| |||| Sbjct 3265 TAGTGCTATGCATGGTTCCTTTGT 3288 >seq198484 Length=6561 Score = 96.9 bits (106), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 29476 AACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGG 29535 || ||||| || || ||||| || | | || | | || ||||| |||||||| ||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 29536 GCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCAT 29595 || ||| | | || || |||||||| || | ||||| |||||||| |||||||||||| Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 29596 AACTTCCCACTTGATCT---GGCTACA 29619 |||||||| || || || ||||||| Sbjct 6354 AACTTCCCTCTAGACCTAGCGGCTACA 6380 >seq197639 Length=228 Score = 93.3 bits (102), Expect = 1e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 || ||||| |||||||| ||||| ||| | | || || |||||||| || | ||||| Sbjct 210 GGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTT 151 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||||| |||||||||||||||||||| || || || || Sbjct 150 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 110 >seq180125 Length=5570 Score = 89.7 bits (98), Expect = 2e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| || || ||||| ||| | |||| ||||||| |||| ||||| ||||| ||| Sbjct 919 GGTTACAGATTCGGTCAAGAGGAATAAACTTCTAACATCATAGCAGCTCATGGTTATTTT 978 Query 29350 GGACGTTTGATCTTCCAATATGCT 29373 || || |||||||||||||||||| Sbjct 979 GGCCGCTTGATCTTCCAATATGCT 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146316915644238