Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq198569 242 1e-59 seq198258 123 7e-24 seq197706 120 9e-23 seq197127 118 3e-22 seq200167 114 4e-21 seq198484 95.1 3e-15 seq197886 89.7 1e-13 seq197639 86.0 2e-12 >seq198569 Length=8129 Score = 242 bits (268), Expect = 1e-59 Identities = 337/471 (72%), Gaps = 16/471 (3%) Strand=Plus/Plus Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||| ||||| || |||||||||||||| | || | Sbjct 2756 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTG 2815 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||| ||||||||| |||||| || |||||||||||||| || || |||| || Sbjct 2816 GGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2875 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGT 19206 ||| | |||||||| |||||||||| ||| || | |||||| | || || | Sbjct 2876 TTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCT 2935 Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCC-GTT 19265 ||||| ||||||| |||| | |||||||||||||| || || ||||| |||||||| || Sbjct 2936 GGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCACCCATTT 2995 Query 19266 CCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325 | | ||| | ||||| |||||||| || | ||| || ||||| | ||| ||||| ||||| Sbjct 2996 CGATATGTTAGGTGTAGCTGGTGTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC 3055 Query 19326 GCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385 |||| || | || | | ||||| || | || | || || Sbjct 3056 -CTTGGTAGCT----TCTAATCAGGGAAACCAC----------CCCGCTAATGAAGGGTA 3100 Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445 || ||||| ||||| || || |||||||| ||||| ||||||||||| |||||||| || Sbjct 3101 CAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCG 3160 Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTT 19496 | || ||||| || || |||||||| |||||| ||||||| || Sbjct 3161 ATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTTTT 3211 >seq198258 Length=3934 Score = 123 bits (136), Expect = 7e-24 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 19189 ATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAAC 19248 |||||| |||| || | |||| ||||||| | || | |||||| ||||||| || || Sbjct 3146 ATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTGAGCACAAT 3205 Query 19249 ATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTT 19308 ||||| | ||||| || |||||| | ||||| |||||||| |||||||| || |||||| Sbjct 3206 ATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCTATTT 3265 Query 19309 AGTGCGATGCACGGTTCGCTTGT 19331 ||||| ||||| ||||| |||| Sbjct 3266 AGTGCTATGCATGGTTCCTTTGT 3288 >seq197706 Length=393 Score = 120 bits (132), Expect = 9e-23 Identities = 179/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| |||||||||||||| ||||| || || |||||||| || || || |||||| Sbjct 144 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTT 203 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA--GCAGCA 18934 | || ||| |||||||| ||||| || || || || ||| | |||| | | ||| Sbjct 204 TCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCA 263 Query 18935 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 18994 || || || | ||||| ||||| || ||||||||| || ||||||||||| | | Sbjct 264 --GCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTAT 321 Query 18995 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACA 19054 |||| || || || | | || | || | |||||| | |||| || | ||| | Sbjct 322 ACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATA 381 Query 19055 TGGGACGCGAGT 19066 |||| || |||| Sbjct 382 TGGGTCGTGAGT 393 >seq197127 Length=16832 Score = 118 bits (130), Expect = 3e-22 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 19139 CTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGG 19198 |||| || ||| | |||||||| |||||||||| ||| || | |||||| | | Sbjct 16832 CTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAG 16773 Query 19199 GTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGC 19258 | || |||||| ||||||| |||| | |||||||||||||| || || ||||| |||| Sbjct 16772 GAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGC 16713 Query 19259 ACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCG 19297 |||| || |||||| | ||||| |||| |||||||||| Sbjct 16712 ACCCATTTCACATGTTAGGTGTAGCTG--GTGTTCGGCG 16676 >seq200167 Length=15642 Score = 114 bits (126), Expect = 4e-21 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||| | || || |||||| ||||||| ||| |||||||||||||| || || Sbjct 10823 TATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAA 10764 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 |||||| |||||||| || |||||| | ||||| |||||||| || || || || || || Sbjct 10763 CATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTT 10704 Query 19308 TAGTGCGATGCACGGTTC 19325 ||| | ||||| ||||| Sbjct 10703 CAGTACTATGCATGGTTC 10686 >seq198484 Length=6561 Score = 95.1 bits (104), Expect = 3e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 19564 TTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACT 19623 || ||||| || || || ||||| || | |||| | | || ||||| ||| |||| Sbjct 6231 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACC 6290 Query 19624 TGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCT 19683 ||||| || || | || ||||||||||| || | || || ||||| |||||||||||| Sbjct 6291 TGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 6350 Query 19684 CATAACTTCCCACTTGA 19700 ||||||||||| || || Sbjct 6351 CATAACTTCCCTCTAGA 6367 >seq197886 Length=1258 Score = 89.7 bits (98), Expect = 1e-13 Identities = 181/268 (68%), Gaps = 7/268 (3%) Strand=Plus/Plus Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || | || ||||| || | | || || ||| | || | |||||||||| Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 | ||| ||||||||| | || || | ||| | | || | ||| |||| Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618 ||||| | ||||| || || || ||||| ||| | |||| || | |||||||| ||| Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTA 511 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGG------CTTTGAGGTAATGCACG 19672 | ||||||||||| || | || | ||||||| | || ||| || || || | Sbjct 512 AGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGT-ATTCATG 570 Query 19673 AACGTAATGCTCATAACTTCCCACTTGA 19700 |||||||||||||||||||||| || || Sbjct 571 AACGTAATGCTCATAACTTCCCTCTAGA 598 >seq197639 Length=228 Score = 86.0 bits (94), Expect = 2e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 || ||||| ||| |||| ||||| || || | || ||||||||||| || | || || Sbjct 210 GGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTT 151 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 ||||| ||||||||||||||||||||||| || || Sbjct 150 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140813231343174