Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 242 1e-59
seq198258 123 7e-24
seq197706 120 9e-23
seq197127 118 3e-22
seq200167 114 4e-21
seq198484 95.1 3e-15
seq197886 89.7 1e-13
seq197639 86.0 2e-12
>seq198569
Length=8129
Score = 242 bits (268), Expect = 1e-59
Identities = 337/471 (72%), Gaps = 16/471 (3%)
Strand=Plus/Plus
Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086
|||||| | |||| || | ||| ||||| || |||||||||||||| | || |
Sbjct 2756 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTG 2815
Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146
|| ||||| ||||||||| |||||| || |||||||||||||| || || |||| ||
Sbjct 2816 GGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2875
Query 19147 TTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGT 19206
||| | |||||||| |||||||||| ||| || | |||||| | || || |
Sbjct 2876 TTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCT 2935
Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCC-GTT 19265
||||| ||||||| |||| | |||||||||||||| || || ||||| |||||||| ||
Sbjct 2936 GGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCACCCATTT 2995
Query 19266 CCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325
| | ||| | ||||| |||||||| || | ||| || ||||| | ||| ||||| |||||
Sbjct 2996 CGATATGTTAGGTGTAGCTGGTGTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC 3055
Query 19326 GCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385
|||| || | || | | ||||| || | || | || ||
Sbjct 3056 -CTTGGTAGCT----TCTAATCAGGGAAACCAC----------CCCGCTAATGAAGGGTA 3100
Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445
|| ||||| ||||| || || |||||||| ||||| ||||||||||| |||||||| ||
Sbjct 3101 CAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCG 3160
Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTT 19496
| || ||||| || || |||||||| |||||| ||||||| ||
Sbjct 3161 ATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTTTT 3211
>seq198258
Length=3934
Score = 123 bits (136), Expect = 7e-24
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 19189 ATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAAC 19248
|||||| |||| || | |||| ||||||| | || | |||||| ||||||| || ||
Sbjct 3146 ATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTGAGCACAAT 3205
Query 19249 ATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTT 19308
||||| | ||||| || |||||| | ||||| |||||||| |||||||| || ||||||
Sbjct 3206 ATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCTATTT 3265
Query 19309 AGTGCGATGCACGGTTCGCTTGT 19331
||||| ||||| ||||| ||||
Sbjct 3266 AGTGCTATGCATGGTTCCTTTGT 3288
>seq197706
Length=393
Score = 120 bits (132), Expect = 9e-23
Identities = 179/252 (71%), Gaps = 4/252 (2%)
Strand=Plus/Plus
Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876
|| ||||| |||||||||||||| ||||| || || |||||||| || || || ||||||
Sbjct 144 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTT 203
Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA--GCAGCA 18934
| || ||| |||||||| ||||| || || || || ||| | |||| | | |||
Sbjct 204 TCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCA 263
Query 18935 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 18994
|| || || | ||||| ||||| || ||||||||| || ||||||||||| | |
Sbjct 264 --GCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTAT 321
Query 18995 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACA 19054
|||| || || || | | || | || | |||||| | |||| || | ||| |
Sbjct 322 ACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATA 381
Query 19055 TGGGACGCGAGT 19066
|||| || ||||
Sbjct 382 TGGGTCGTGAGT 393
>seq197127
Length=16832
Score = 118 bits (130), Expect = 3e-22
Identities = 122/159 (77%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 19139 CTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGG 19198
|||| || ||| | |||||||| |||||||||| ||| || | |||||| | |
Sbjct 16832 CTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAG 16773
Query 19199 GTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGC 19258
| || |||||| ||||||| |||| | |||||||||||||| || || ||||| ||||
Sbjct 16772 GAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGC 16713
Query 19259 ACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCG 19297
|||| || |||||| | ||||| |||| ||||||||||
Sbjct 16712 ACCCATTTCACATGTTAGGTGTAGCTG--GTGTTCGGCG 16676
>seq200167
Length=15642
Score = 114 bits (126), Expect = 4e-21
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247
||||||| | || || |||||| ||||||| ||| |||||||||||||| || ||
Sbjct 10823 TATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAA 10764
Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307
|||||| |||||||| || |||||| | ||||| |||||||| || || || || || ||
Sbjct 10763 CATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTT 10704
Query 19308 TAGTGCGATGCACGGTTC 19325
||| | ||||| |||||
Sbjct 10703 CAGTACTATGCATGGTTC 10686
>seq198484
Length=6561
Score = 95.1 bits (104), Expect = 3e-15
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 19564 TTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACT 19623
|| ||||| || || || ||||| || | |||| | | || ||||| ||| ||||
Sbjct 6231 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACC 6290
Query 19624 TGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCT 19683
||||| || || | || ||||||||||| || | || || ||||| ||||||||||||
Sbjct 6291 TGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 6350
Query 19684 CATAACTTCCCACTTGA 19700
||||||||||| || ||
Sbjct 6351 CATAACTTCCCTCTAGA 6367
>seq197886
Length=1258
Score = 89.7 bits (98), Expect = 1e-13
Identities = 181/268 (68%), Gaps = 7/268 (3%)
Strand=Plus/Plus
Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498
|||| || | || ||||| || | | || || ||| | || | ||||||||||
Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391
Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558
| ||| ||||||||| | || || | ||| | | || | ||| ||||
Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451
Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618
||||| | ||||| || || || ||||| ||| | |||| || | |||||||| |||
Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTA 511
Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGG------CTTTGAGGTAATGCACG 19672
| ||||||||||| || | || | ||||||| | || ||| || || || |
Sbjct 512 AGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGT-ATTCATG 570
Query 19673 AACGTAATGCTCATAACTTCCCACTTGA 19700
|||||||||||||||||||||| || ||
Sbjct 571 AACGTAATGCTCATAACTTCCCTCTAGA 598
>seq197639
Length=228
Score = 86.0 bits (94), Expect = 2e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665
|| ||||| ||| |||| ||||| || || | || ||||||||||| || | || ||
Sbjct 210 GGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTT 151
Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700
||||| ||||||||||||||||||||||| || ||
Sbjct 150 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 140813231343174
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |