Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq194543 111 1e-19 >seq194543 Length=10949 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||| ||| | ||||| || ||||||||||| || | | Sbjct 3219 GACTCTTTCTGTATGTTGTAATCGGCGAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCA 3160 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 ||||||||||||| ||||| ||||| || ||||| ||||| || ||| ||||| Sbjct 3159 AAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTTGCTTTCACG 3100 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||||| || || |||| || | || |||||||| || ||||| Sbjct 3099 TTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTC 3040 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 3039 ACGAAGATCTGCAT 3026 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGA 131988 ||||| || || || || || || ||| | ||| ||| |||||| | ||| ||||||| Sbjct 3675 GACTCCTTCTGGATATTATAATCTGCT-AGGGTCCGCCCATCTTCCAACTGCTTACCGGC 3617 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | | || | |||||| ||||||||||| || ||||||||||| ||||| || | Sbjct 3616 AAAAATCAAACGCTGCTGATCTGGAGGAATCCCTTCTTTATCTTGGATTTTGGCCTTGAC 3557 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | |||||| | ||| ||||| | || | ||||| ||||| || ||||| Sbjct 3556 ATTATCGATAGTATCAGAGCTCTCGACTTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTT 3497 Query 132109 TATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 3496 GACGAAGATTTGCAT 3482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475418462599080