Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq116321 89.7 5e-13 seq188063 84.2 2e-11 seq176217 84.2 2e-11 >seq116321 Length=1411 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | || || || || || |||||||| | ||||| | || || || ||| | Sbjct 864 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACTTTGGAGGTGGAGAGCTCA 923 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || || || || || || |||||||| || || || || Sbjct 924 -GATACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 982 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || ||||| | || ||| ||||||||||| || | | | | | ||||||||| Sbjct 983 GCAGAGGCTCATCTTCGCCGGAAAACAACTCGAGGACGGTCGGACCTTGGCCGATTACAA 1042 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||| || || || ||| ||||||| ||| Sbjct 1043 TATTCAGAAGGAGTCTACCCTTCATTTGGTG 1073 >seq188063 Length=7454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| ||||||| || | |||||| | || | || | Sbjct 736 ATGCAGATTTTCGTGAAAACCCTAACCGGCAAGACCATCACGCTTGAGGAGAAAAGCTCT 677 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| || || || || || || || || || || ||| Sbjct 676 GATACCATCGATAACGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGACCAG 617 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||||||| | || ||| || |||||||| || | | | | | ||||||||| Sbjct 616 CAAAGACTCATCTTCGCCGGAAAGCAACTCGAGGACGGTCGTACCCTTGCCGATTACAAC 557 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| ||||||||| | ||||| || Sbjct 556 ATCCAAAAGGAATCCACCCTCCATTTGGT 528 >seq176217 Length=4970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || || | || |||||| | ||||| | || |||||| | Sbjct 2747 CATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTC 2688 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| || || || || || || || || || || || Sbjct 2687 TGACACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 2628 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| || |||| | |||||| |||||||| || | | | | ||||||||| Sbjct 2627 GCAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATTACAA 2568 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||| ||||| ||||||||| | ||||| ||| Sbjct 2567 TATCCAAAAGGAATCCACCCTCCATTTGGTG 2537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443980534572960