Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq116321 89.7 5e-13
seq188063 84.2 2e-11
seq176217 84.2 2e-11
>seq116321
Length=1411
Score = 89.7 bits (98), Expect = 5e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233
||||| | || || || || || |||||||| | ||||| | || || || ||| |
Sbjct 864 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACTTTGGAGGTGGAGAGCTCA 923
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| ||||| | || || || || || || |||||||| || || || ||
Sbjct 924 -GATACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 982
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||| || ||||| | || ||| ||||||||||| || | | | | | |||||||||
Sbjct 983 GCAGAGGCTCATCTTCGCCGGAAAACAACTCGAGGACGGTCGGACCTTGGCCGATTACAA 1042
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|||||| || || || ||| ||||||| |||
Sbjct 1043 TATTCAGAAGGAGTCTACCCTTCATTTGGTG 1073
>seq188063
Length=7454
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| ||||||| || | |||||| | || | || |
Sbjct 736 ATGCAGATTTTCGTGAAAACCCTAACCGGCAAGACCATCACGCTTGAGGAGAAAAGCTCT 677
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| ||||| | || ||| || || || || || || || || || || |||
Sbjct 676 GATACCATCGATAACGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGACCAG 617
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||||||||| | || ||| || |||||||| || | | | | | |||||||||
Sbjct 616 CAAAGACTCATCTTCGCCGGAAAGCAACTCGAGGACGGTCGTACCCTTGCCGATTACAAC 557
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| ||||| ||||||||| | ||||| ||
Sbjct 556 ATCCAAAAGGAATCCACCCTCCATTTGGT 528
>seq176217
Length=4970
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
||||||| | || || || || | || |||||| | ||||| | || |||||| |
Sbjct 2747 CATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTC 2688
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| || || || | || ||| || || || || || || || || || || ||
Sbjct 2687 TGACACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 2628
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|||||| || |||| | |||||| |||||||| || | | | | |||||||||
Sbjct 2627 GCAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATTACAA 2568
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384
||| ||||| ||||||||| | ||||| |||
Sbjct 2567 TATCCAAAAGGAATCCACCCTCCATTTGGTG 2537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443980534572960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |