Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq162333 87.8 1e-12 seq101090 82.4 6e-11 >seq162333 Length=3517 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||| |||||| | || ||||||||| || | |||| || ||||||||||||||| Sbjct 3022 GACAAGGAAGGCATTCCACCTGATCAACAGAGATTGATTTTCGCTGGCAAACAATTAGAA 3081 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | ||| | | || |||||||| ||||| || || || || |||||||| ||| Sbjct 3082 GATGGTCGGACTCTTGCTGACTACAACATCCAAAAGGAGTCCACCCTTCATTTAGTTTTG 3141 Query 106473 AGG 106475 ||| Sbjct 3142 AGG 3144 >seq101090 Length=1060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||| |||||| | || ||||| |||||| | |||| || ||||||||||| ||| Sbjct 306 GACAAGGAAGGCATTCCACCTGATCCACAAAGATTGATTTTCGCTGGCAAACAATTGGAA 247 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | ||| | | || |||||||| ||||| || || || || |||||||| ||| Sbjct 246 GATGGTCGGACTCTTGCGGACTACAACATCCAAAAGGAGTCAACCCTTCATTTAGTTTTG 187 Query 106473 AGG 106475 ||| Sbjct 186 AGG 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401347926211424