Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq197427 307 2e-77 >seq197427 Length=19924 Score = 307 bits (340), Expect = 2e-77 Identities = 399/544 (73%), Gaps = 13/544 (2%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| | ||||| | |||| || ||| |||| | || |||||||||||| | Sbjct 14556 AACCCAGATCGCTTCTGCATGTTTCCAATCAAGTACCCACAAATCTGGGAAATGTACAAG 14497 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 |||| | || |||||||| ||||| || || || ||||| ||| | ||||| ||| Sbjct 14496 AAAG-CAGAAGCCTCCTTCTGGACGGCTGAAGAAGTCGATCTCTCCTCCGACCTCCGCCA 14438 Query 1455854 CTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910 ||||| | | |||| |||||||||||| || ||||||| |||||||||||||| || Sbjct 14437 CTGGGAGGAAACCCTGACCGACGACGAGCGACACTTCATCACCCACGTCCTCGCCTTCTT 14378 Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970 ||||||| || || ||||| ||||||||||||||| | || ||||| ||||||| Sbjct 14377 -CGCCGCCTCTGACGGTATCGTCTTGGAGAACCTGGCCGGCAGGTTCATGAAGGAGGTCC 14319 Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030 | | | ||||| | |||||||| ||||| ||||||||||| ||||||||||| | Sbjct 14318 AGGTAGCTGAGGCCAGAGCCTTTTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCG 14259 Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090 ||| ||| ||| || |||| | ||| ||||||| | ||||||||||| || | Sbjct 14258 AAATGTACAGCCTCTTGCTCGAGTCGTACATCAAGGATTCTAACGAGAAGGACCGGCTTT 14199 Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150 | | ||| ||||| ||| | || | ||| || |||||| | ||||| | ||||||| Sbjct 14198 TCCACGCGATCGAGACGATCCCTTGCGTGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGA 14139 Query 1456151 TCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGG 1456208 || || || || ||| |||| |||||||| |||| | |||||| ||||||| | Sbjct 14138 TCGAC--GGTGG----CGAGTCTTTCGCCGAGCGAATCGTTGCCTTTGCTTGCGTCGAAG 14085 Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 | || || ||||| || || |||||||| ||||| |||||||| |||||||| | |||| Sbjct 14084 GGATTTTCTTCTCCGGGAGCTTCTGCGCGATCTTCTGGCTCAAAAAGCGCGGGTTGATGC 14025 Query 1456269 CCGG 1456272 | || Sbjct 14024 CTGG 14021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7158501252676886