Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 307 2e-77
>seq197427
Length=19924
Score = 307 bits (340), Expect = 2e-77
Identities = 399/544 (73%), Gaps = 13/544 (2%)
Strand=Plus/Minus
Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793
||||| | ||||| | |||| || ||| |||| | || |||||||||||| |
Sbjct 14556 AACCCAGATCGCTTCTGCATGTTTCCAATCAAGTACCCACAAATCTGGGAAATGTACAAG 14497
Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853
|||| | || |||||||| ||||| || || || ||||| ||| | ||||| |||
Sbjct 14496 AAAG-CAGAAGCCTCCTTCTGGACGGCTGAAGAAGTCGATCTCTCCTCCGACCTCCGCCA 14438
Query 1455854 CTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910
||||| | | |||| |||||||||||| || ||||||| |||||||||||||| ||
Sbjct 14437 CTGGGAGGAAACCCTGACCGACGACGAGCGACACTTCATCACCCACGTCCTCGCCTTCTT 14378
Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970
||||||| || || ||||| ||||||||||||||| | || ||||| |||||||
Sbjct 14377 -CGCCGCCTCTGACGGTATCGTCTTGGAGAACCTGGCCGGCAGGTTCATGAAGGAGGTCC 14319
Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030
| | | ||||| | |||||||| ||||| ||||||||||| ||||||||||| |
Sbjct 14318 AGGTAGCTGAGGCCAGAGCCTTTTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCG 14259
Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090
||| ||| ||| || |||| | ||| ||||||| | ||||||||||| || |
Sbjct 14258 AAATGTACAGCCTCTTGCTCGAGTCGTACATCAAGGATTCTAACGAGAAGGACCGGCTTT 14199
Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150
| | ||| ||||| ||| | || | ||| || |||||| | ||||| | |||||||
Sbjct 14198 TCCACGCGATCGAGACGATCCCTTGCGTGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGA 14139
Query 1456151 TCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGG 1456208
|| || || || ||| |||| |||||||| |||| | |||||| ||||||| |
Sbjct 14138 TCGAC--GGTGG----CGAGTCTTTCGCCGAGCGAATCGTTGCCTTTGCTTGCGTCGAAG 14085
Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268
| || || ||||| || || |||||||| ||||| |||||||| |||||||| | ||||
Sbjct 14084 GGATTTTCTTCTCCGGGAGCTTCTGCGCGATCTTCTGGCTCAAAAAGCGCGGGTTGATGC 14025
Query 1456269 CCGG 1456272
| ||
Sbjct 14024 CTGG 14021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7158501252676886
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |