Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq198569 241 1e-58 seq198282 174 2e-38 seq199332 163 3e-35 seq197886 140 4e-28 seq197127 129 7e-25 seq198491 120 3e-22 seq198484 120 3e-22 seq200167 118 1e-21 seq198248 109 6e-19 seq198608 102 9e-17 seq197639 102 9e-17 seq198455 100 3e-16 seq198258 98.7 1e-15 seq100777 96.9 4e-15 seq180125 82.4 9e-11 >seq198569 Length=8129 Score = 241 bits (266), Expect = 1e-58 Identities = 326/453 (72%), Gaps = 16/453 (4%) Strand=Plus/Plus Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346 |||||||| ||||||||||||||| | |||||| |||||||| || ||||| ||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 160347 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAA 160406 |||||||| ||||| || || || || ||||||| ||| | | ||||| | |||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 160407 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 160466 || ||| || |||| |||||||| || |||||||||||||| |||| |||| | ||| Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 160467 TTCCAAGCAGAACACAATATCCTTATGCATCC-GTTCCACATGCTCGGCGTTGCTGGGGT 160525 ||||| || || ||||||||||||||||| || ||| | ||| | || || ||||| || Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 160526 ATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCG 160585 ||| | || ||| | ||| ||||||||| || ||||| | | | Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGG------------TTCCTTGGTAG--CT 3065 Query 160586 TGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGAC 160645 | || | ||||| | | || | || || | || ||||||||||| || || Sbjct 3066 TCTAATCAGGGAAAC-CACCCCGCTAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAAC 3124 Query 160646 CTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 160705 || || || || || || |||||||| || || || ||||||||||||||||| || Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184 Query 160706 CAACAACTCCCGTTCACTTCACTTCTTCCTGGC 160738 ||||||||| ||||| | || || ||||| || Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq198282 Length=4172 Score = 174 bits (192), Expect = 2e-38 Identities = 212/289 (73%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 162382 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGT 162441 ||||||| || |||||||| ||||| || ||||| || |||| ||||| || || || | Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60 Query 162442 GGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCA 162501 || | ||||| || ||||| ||||| || || | ||| |||||| || |||| Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120 Query 162502 TTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAG 162561 | | ||||| || || ||||| ||||| || || ||||| |||||| || | |||| Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180 Query 162562 CAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTAC 162621 | ||||||||||| ||||| || |||||||| || |||||||| | ||||| || | | Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240 Query 162622 GTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCC 162670 |||| ||| | || || || || || ||||| ||| |||| ||||| Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 289 >seq199332 Length=2940 Score = 163 bits (180), Expect = 3e-35 Identities = 330/480 (69%), Gaps = 16/480 (3%) Strand=Plus/Minus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGG---GATCGTTTCGTTTTTGTTGGCTGGTCT 161744 ||||| || | || |||||| | |||| || |||||||||||||| || ||||| Sbjct 2537 TTTGATATTATGGATGACTGGTT---ACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCC 2481 Query 161745 GGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACT 161804 || || | || || | ||| ||| | || | || |||||| |||| || ||||| Sbjct 2480 GGTCTATTGCTCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACC 2421 Query 161805 TTCGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACTT 161863 || | ||| |||||||| || || | || ||||||||| | ||||| ||| ||||| Sbjct 2420 TTTGTAACTTCATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTT 2362 Query 161864 TCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCT 161922 | || ||| ||||| ||||| ||| | | | | | ||| || || || || | Sbjct 2361 CTTAACCGCGGCAGTTTCTACTCCTGCTAATAGTTTACTTTACTCT-TTGTTGTTACTAT 2303 Query 161923 GGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATT 161982 ||||||| || || ||||| ||||| || ||| ||| | || || || |||| | Sbjct 2302 GGGGTCCAGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGT 2243 Query 161983 TTGTGGCACTCCATGGTGCCTTCGCCCTAA----TTGGATTCATGCTCCGTCAGTTTGAA 162038 |||| || ||||| || || || | |||| |||| ||||| |||| |||||| Sbjct 2242 TTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAA 2184 Query 162039 CTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCT 162098 || || || | || | || || || ||||| || || ||||||| ||| ||||| Sbjct 2183 CTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCG 2124 Query 162099 GTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTT-TTTCGCTCC 162157 |||||||| || ||||| || || || | |||||||| ||||||| |||| |||| Sbjct 2123 GTTTTTGTTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTCACTCC 2064 >seq197886 Length=1258 Score = 140 bits (154), Expect = 4e-28 Identities = 196/275 (71%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 || || |||||||||||||||| | || || || || | || | || |||||||| Sbjct 334 GGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCCTA 393 Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 160796 | | ||||||||| | || |||| ||||| || | | ||| ||||| |||| || Sbjct 394 ACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTGTC 453 Query 160797 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAAC 160856 ||||| || ||||| || |||||||| ||| | | ||| ||||||||||||| | || Sbjct 454 AACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTAAG 513 Query 160857 ACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGT-----TATGCATGAGC 160911 || ||||| || | | || | |||| |||||| | |||| ||| ||||| | Sbjct 514 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGAAC 573 Query 160912 GTAACGCACACAACTTCCCACTCGACCTCGCTGCT 160946 |||| || || |||||||| || ||||| | |||| Sbjct 574 GTAATGCTCATAACTTCCCTCTAGACCTAGTTGCT 608 >seq197127 Length=16832 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 160375 CTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 160434 ||||||| ||| | | ||||| | |||||||| ||| || |||| |||||||| | Sbjct 16832 CTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAG 16773 Query 160435 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGC 160494 | |||||||||||||| |||| |||| | |||||||| || || |||||||||||||||| Sbjct 16772 GAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGC 16713 Query 160495 ATCCGTTCCACATGCTCGGCGTTGCTGGGGT 160525 | || || |||||| | || || ||||| || Sbjct 16712 ACCCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq198491 Length=6715 Score = 120 bits (132), Expect = 3e-22 Identities = 139/185 (75%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 162141 AGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTT 162200 ||||||||||| | || |||||| || | || || ||| ||||| | | ||| || Sbjct 5667 AGTTGGTTTTTT-CGCCTAGCTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTT 5609 Query 162201 CAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 162260 ||||| ||| |||| ||||| ||||||| || ||||||||||||||||| ||| || || Sbjct 5608 CAAGGTTTC-ATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTA 5550 Query 162261 GGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGAT 162320 || | || | |||| |||||||| || | ||| || |||||||| |||| || ||| Sbjct 5549 GGCGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGAT 5490 Query 162321 GGAGA 162325 || || Sbjct 5489 GGTGA 5485 >seq198484 Length=6561 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 160803 AACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGG 160862 || |||||||| |||||||| || | | ||| ||||||| |||||| | || |||||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 160863 GCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 160922 || || | | || |||||| ||||||||||||||||||||||| ||||| || || Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 160923 AACTTCCCACTCGACCTCGCTGCT 160946 |||||||| || ||||| || ||| Sbjct 6354 AACTTCCCTCTAGACCTAGCGGCT 6377 >seq200167 Length=15642 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 160421 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 160480 || ||||||||| || |||||||||||||| |||| ||| |||||||| || || || Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 160481 CAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTT 160540 ||| ||||||||||| || || |||||| | || || ||||| ||||| ||||| || | Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 160541 GTTCTCTGCTATGCACGG 160558 |||| | ||||||| || Sbjct 10706 GTTCAGTACTATGCATGG 10689 >seq198248 Length=3867 Score = 109 bits (120), Expect = 6e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 160728 TTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACC 160787 || ||||| || || ||||||||||| || ||||||||||||||| | ||| | ||||| Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 160788 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGT 160847 ||||| ||||| || || |||||||| |||||||| || | | ||| |||||||| || Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGT 272 >seq198608 Length=9413 Score = 102 bits (112), Expect = 9e-17 Identities = 120/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 162444 CTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATT 162503 |||||||| || ||||| ||||| || || | ||| |||||| || |||| | Sbjct 2987 CTTCATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTA 2928 Query 162504 ATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCA 162563 | ||||| || || ||||| ||||| || || ||||| |||||| || | ||||| Sbjct 2927 GTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCG 2868 Query 162564 GAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCT 162604 ||||||||||| ||||| || |||||||| || |||||||| Sbjct 2867 GAAGATCCTGAATTTGAGACTTTCTACACCAA-AACATTCT 2828 >seq197639 Length=228 Score = 102 bits (112), Expect = 9e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 160833 GATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGT 160892 ||| ||||||| |||||| | || |||||||| || | | || |||||| |||||| Sbjct 219 GATAGTCAAGGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTGGT 160 Query 160893 ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCT 160946 ||||||||||||||||| ||||| || || |||||||| || ||||| || ||| Sbjct 159 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCT 106 >seq198455 Length=6199 Score = 100 bits (110), Expect = 3e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 162114 TTCCTTATCTACCCAT-TGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGC 162172 ||||| || || ||| | ||| | || |||||||||| || || |||||| || Sbjct 6024 TTCCTGATTTATCCACCTTGGTGAATCTGGTTGGTTTTTTGCGCCAAGCTTTGGCGTATA 6083 Query 162173 AGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTT 162232 | | || ||| ||||| | | ||| ||||||| || ||||| ||||| ||||||| || Sbjct 6084 A-CTATATTTCGATTCATCCTTTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATT 6142 Query 162233 CCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGG 162289 ||||||||||||||||| ||| || |||| | || | |||| |||||||| || Sbjct 6143 TCATATGATGGGAGTTGCCGGTGTATTAGGCGCGGCTTTGCTATGCGCTATTCATGG 6199 >seq198258 Length=3934 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 160425 ATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAAT 160484 |||||| | || || ||| ||||||| |||| | || | |||||| | || || |||||| Sbjct 3146 ATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTGAGCACAAT 3205 Query 160485 ATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTC 160544 |||||| | || || || |||||| | || || ||||| |||||||| || ||| | || Sbjct 3206 ATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCTATTT 3265 Query 160545 TCTGCTATGCACGG 160558 ||||||||| || Sbjct 3266 AGTGCTATGCATGG 3279 >seq100777 Length=1053 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 161961 CAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTC 162020 ||| | ||||| || |||| |||||| || || ||||| || |||| ||||| || ||| Sbjct 1047 CAATTAGGGGGTCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTC 988 Query 162021 ATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCG 162080 ||| | || || || ||||| || || | || | || || || ||||| ||||| Sbjct 987 ATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAATTACGACCTTATAATGCAATTGCA 928 Query 162081 TTCTCTGGTCCTATTGCTGTTTTTGT 162106 |||||||| || |||||||||||||| Sbjct 927 TTCTCTGGCCCAATTGCTGTTTTTGT 902 >seq180125 Length=5570 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 ||||| | ||||||||||||||| | || | |||||| | ||||| |||||||| || Sbjct 919 GGTTACAGATTCGGTCAAGAGGAATAAACTTCTAACATCATAGCAGCTCATGGTTATTTT 978 Query 160677 GGTCGTTTGATCTTCCAATATGC 160699 || || ||||||||||||||||| Sbjct 979 GGCCGCTTGATCTTCCAATATGC 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558103820258600