Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq198569 250 3e-61 seq198106 214 2e-50 seq198282 196 6e-45 seq199332 154 2e-32 seq200167 141 1e-28 seq197127 123 3e-23 seq100777 102 1e-16 seq198491 93.3 5e-14 seq198608 87.8 2e-12 seq198248 84.2 3e-11 >seq198569 Length=8129 Score = 250 bits (276), Expect = 3e-61 Identities = 328/453 (72%), Gaps = 16/453 (4%) Strand=Plus/Plus Query 181308 TACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTT 181367 || ||||| ||||| |||||||| || ||| || |||||||| || ||||| |||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 181368 GCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAA 181427 ||||| || ||||| || ||||| || ||||||| ||| | ||||||| | |||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 181428 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 181487 || ||| ||||| | ||||| || || ||||||||||| ||||||| |||| | || Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 181488 TTCCAAGCAGAGCACAACATTCTGATGCATCC-CTTCCACATGTTGGGTGTCGCAGGTGT 181546 ||||| || |||||||| || || ||||| || ||| | ||||| ||||| || ||||| Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 181547 ATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCG 181606 ||| | || || || |||| ||| ||||| ||||| ||||| | ||| || || | Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTCCTTGGT---AGCTT--CTAATCAG 3074 Query 181607 TGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGAC 181666 || || || | || | || |||| || || ||||| || || || Sbjct 3075 GGAAACCAC----------CCCGCTAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAAC 3124 Query 181667 ATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATT 181726 || || || || || || || ||||| ||||| || |||||||||||||||||| || Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184 Query 181727 CAACAACTCACGTTCACTGCACTTCTTCCTCGC 181759 ||||||||| ||||| | || || ||||| || Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq198106 Length=2703 Score = 214 bits (236), Expect = 2e-50 Identities = 507/757 (67%), Gaps = 22/757 (3%) Strand=Plus/Plus Query 182628 TGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT 182687 ||||| ||| | || || | |||| ||| || ||||| || || || || || || || Sbjct 626 TGGTGTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCATGGCGCTTTTGCACTAATA 685 Query 182688 GGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCTTACAATGC 182746 ||||||||| | | ||||| |||||||||| ||| || | | ||||||| ||||| Sbjct 686 GGTTTCATGGTATGTCAATTCGAACTTGCTCAATCTG-TTCAATTATGACCTTATAATGC 744 Query 182747 GATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGG 182806 ||||| || || | || |||| ||| ||||| ||| ||||| || ||||| | || Sbjct 745 AATTGCATTCTCAAGACCAATTGTTGTTTTCGTTTTTGTATTCCTGATTTATCCACTCGG 804 Query 182807 ACAGTCCTCTTGGTTTTTC-GCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTG- 182864 ||| ||||||||| | || ||||||||| | || || || | ||| | Sbjct 805 TTAGTTTGGTTGGTTTTTTTGAGCTCAGCTTTGGTGTATCAGCTATATTTTGATTCATCC 864 Query 182865 TTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCT 182924 || || |||| | || || || |||||| | |||| | |||||||| |||||| | Sbjct 865 TTTTTTTTTCAAGAGTTTCATAATTGGACATTGAACCTAGTTCATATGATTAGAGTTGTT 924 Query 182925 GGTATACTGGGTGGAGCACTGCTCAGTGCTATCCA----TGGTGTCACAGTAGAG---AA 182977 | | || ||| || || |||| |||||| || | || ||| || | | || Sbjct 925 GATGTATTGGCTGCGGCTTTGCTA--TGCTATGCAATATTCATGGCACTGTTGTGGAAAA 982 Query 182978 TACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGA 183037 ||| || | |||||||||||| ||||| ||||| || || | | ||||| | Sbjct 983 TACTTTATCTGAAGATGGAGATGGTGCAAATACATTCTGGGCTTTTAACACAACTCAAGC 1042 Query 183038 GGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGC 183097 | || || ||||| ||||| || | | | |||||| | ||||| || |||||||| Sbjct 1043 TAAAGAAACTTATTCAATGGTCACTGTCAGCTGCTTTTGGCCCCAAATTTTTGGGGTTGC 1102 Query 183098 GTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTG 183157 ||| |||||| |||| || || ||||||||||| ||| | || | | | || Sbjct 1103 TTTTTCCAATAAATGTTGTTTACATTTCTTTATGTTATTTAAACTAGTAACCGATGCATG 1162 Query 183158 GGTCTCTTCTATTGGGATCA-TTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGA 183216 | | | || || ||| || | || || || | || || ||||| ||||| || | Sbjct 1163 GATGAGTGCTCTT-GGAGCAGTCGGTCTGGCCGTGAACCTGCGTGCCTATGACTTCATTT 1221 Query 183217 GTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCC 183276 | ||| ||| | | | |||| ||||| | || ||| |||| | | ||| | Sbjct 1222 CTTTAGAAATTCGCGTACTAGAAAATCCTAAATTTGAG-------ACACCATAAGCATTC 1274 Query 183277 TTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCA 183336 | | ||||| || | ||||||||| |||| || ||||| || ||||||||| | | Sbjct 1275 TCTTAAATGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTA 1334 Query 183337 TCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 | |||||||| || |||||||| | || ||||| || Sbjct 1335 TATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 1371 >seq198282 Length=4172 Score = 196 bits (216), Expect = 6e-45 Identities = 219/293 (75%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 183055 TGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTT 183114 |||| || || || || |||||||| |||||||| |||||||| ||| |||||| |||| Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60 Query 183115 GGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGA 183174 |||| || ||||||||||| ||||| || || | ||| | ||| | | || |||| Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120 Query 183175 TCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAG 183234 | | || || || || || || ||||| ||||| || || ||| || ||| | |||| Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180 Query 183235 CAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTAC 183294 | ||||||||||| || ||||| |||||||| || ||||| || | ||||| || | | Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240 Query 183295 GTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAA 183347 |||||||| |||| || ||||| || ||||||||| | || |||||| || Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTAAA 293 >seq199332 Length=2940 Score = 154 bits (170), Expect = 2e-32 Identities = 317/463 (68%), Gaps = 15/463 (3%) Strand=Plus/Minus Query 182371 TGGACGACTGGGTTAAACGG---GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTAC 182427 |||| |||||| | |||| || || || || ||||| |||||||| || || | | Sbjct 2527 TGGATGACTGGTT---ACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGC 2471 Query 182428 TTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGA 182487 | || | ||| ||| | ||| | || |||||| |||| || ||| | ||||| || Sbjct 2470 TCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTT 2411 Query 182488 GTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCA 182546 ||||| || ||||| | || ||||||| | || || ||| ||||| | || || Sbjct 2410 CATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTTCTTAACCGCG 2352 Query 182547 GCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 182606 || || || || |||||| || | | | | ||| | | |||| |||||||| || Sbjct 2351 GCAGTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGTCCAGAA 2292 Query 182607 TCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTC 182666 | || || |||| || ||||| ||| | || || || |||| || || |||||| Sbjct 2291 GCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTTGCTCTC 2232 Query 182667 CACGGTGCCTTCGCTCTCA----TTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CC 182721 ||||| || || | || | |||||||||| || ||||||||||||||||| | Sbjct 2231 CACGGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAACTTGCTCGATC 2173 Query 182722 TGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCA 182781 || || | | ||||||| ||||| || || || |||| ||| ||||| || || || Sbjct 2172 TG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTTGTTT 2114 Query 182782 GTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTT 182824 ||| ||||| || ||||| | || ||||| |||||| || Sbjct 2113 CTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTT 2071 >seq200167 Length=15642 Score = 141 bits (156), Expect = 1e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 181446 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 181505 ||||| || || ||||||||||| ||||||| ||| || ||||| || ||||||||| Sbjct 10822 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAAC 10763 Query 181506 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTC 181565 || || ||||| || || |||||||| ||||| || |||||||||||||| || |||||| Sbjct 10762 ATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTTC 10703 Query 181566 AGTGCAATGCACGGTTCTTTG 181586 ||| | ||||| ||||||||| Sbjct 10702 AGTACTATGCATGGTTCTTTG 10682 >seq197127 Length=16832 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 181396 CTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTG 181455 ||||||| ||| | ||||||| | |||||||| ||| ||||| | ||||| || | Sbjct 16832 CTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAG 16773 Query 181456 GCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGC 181515 | ||||||||||| ||||||| |||| | || ||||| || |||||||| || || |||| Sbjct 16772 GAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGC 16713 Query 181516 ATCCCTTCCACATGTTGGGTGTCGCAGGTGT 181546 | || || |||||||| ||||| || ||||| Sbjct 16712 ACCCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq100777 Length=1053 Score = 102 bits (112), Expect = 1e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 182628 TGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT 182687 ||||| ||| | ||||| || |||| ||| || ||||| || || || |||| || || Sbjct 1053 TGGTGTCAATTAGGGGGTCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATA 994 Query 182688 GGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGAATCAGACCTTACAATGC 182746 ||||||||| | | ||||| ||||||||||| ||| || | | ||||||| ||||| Sbjct 993 GGTTTCATGTTACGCCAATTCGAACTTGCTCGATCTG-TTCAATTACGACCTTATAATGC 935 Query 182747 GATTGCTTTTTCTGGTCCTATTGCTGTATTCGT 182779 ||||| || ||||| || |||||||| || || Sbjct 934 AATTGCATTCTCTGGCCCAATTGCTGTTTTTGT 902 >seq198491 Length=6715 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 182816 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCA 182875 ||||||||| |||| |||||| || | || || || | ||| | | || |||| Sbjct 5665 TTGGTTTTTT-CGCCTAGCTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTTCA 5607 Query 182876 GGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGG 182935 |||||| | || ||||| | ||||| || ||||||||||||||||| ||| || | || Sbjct 5606 AGGTTTC-ATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGG 5548 Query 182936 TGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGG 182995 | || |||| | ||||| ||||| | ||| || || ||||| || | ||||||||| Sbjct 5547 CGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGATGG 5488 Query 182996 AGA 182998 || Sbjct 5487 TGA 5485 >seq198608 Length=9413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 183120 CACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATT 183179 || ||||||||||| ||||| || || | ||| | ||| | | || |||| | | Sbjct 2984 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 2925 Query 183180 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAA 183239 || || || || || || ||||| ||||| || || ||| || ||| | ||||| ||| Sbjct 2924 GGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAA 2865 Query 183240 GATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCT 183277 |||||||| || ||||| |||||||| || ||||| || Sbjct 2864 GATCCTGAATTTGAGACTTTCTACACCAA-AACATTCT 2828 >seq198248 Length=3867 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 181749 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 181808 || ||||| || || ||||||||||| || ||||||||||| || | || | ||||| Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 181809 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCT 181847 ||||| || || || ||||| ||||| |||||||| ||| Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCT 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613079496407840