Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_026926.1
Length=192108
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 250 3e-61
seq198106 214 2e-50
seq198282 196 6e-45
seq199332 154 2e-32
seq200167 141 1e-28
seq197127 123 3e-23
seq100777 102 1e-16
seq198491 93.3 5e-14
seq198608 87.8 2e-12
seq198248 84.2 3e-11
>seq198569
Length=8129
Score = 250 bits (276), Expect = 3e-61
Identities = 328/453 (72%), Gaps = 16/453 (4%)
Strand=Plus/Plus
Query 181308 TACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTT 181367
|| ||||| ||||| |||||||| || ||| || |||||||| || ||||| ||||
Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839
Query 181368 GCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAA 181427
||||| || ||||| || ||||| || ||||||| ||| | ||||||| | ||||||
Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899
Query 181428 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 181487
|| ||| ||||| | ||||| || || ||||||||||| ||||||| |||| | ||
Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959
Query 181488 TTCCAAGCAGAGCACAACATTCTGATGCATCC-CTTCCACATGTTGGGTGTCGCAGGTGT 181546
||||| || |||||||| || || ||||| || ||| | ||||| ||||| || |||||
Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019
Query 181547 ATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCG 181606
||| | || || || |||| ||| ||||| ||||| ||||| | ||| || || |
Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTCCTTGGT---AGCTT--CTAATCAG 3074
Query 181607 TGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGAC 181666
|| || || | || | || |||| || || ||||| || || ||
Sbjct 3075 GGAAACCAC----------CCCGCTAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAAC 3124
Query 181667 ATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATT 181726
|| || || || || || || ||||| ||||| || |||||||||||||||||| ||
Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184
Query 181727 CAACAACTCACGTTCACTGCACTTCTTCCTCGC 181759
||||||||| ||||| | || || ||||| ||
Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217
>seq198106
Length=2703
Score = 214 bits (236), Expect = 2e-50
Identities = 507/757 (67%), Gaps = 22/757 (3%)
Strand=Plus/Plus
Query 182628 TGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT 182687
||||| ||| | || || | |||| ||| || ||||| || || || || || || ||
Sbjct 626 TGGTGTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCATGGCGCTTTTGCACTAATA 685
Query 182688 GGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCTTACAATGC 182746
||||||||| | | ||||| |||||||||| ||| || | | ||||||| |||||
Sbjct 686 GGTTTCATGGTATGTCAATTCGAACTTGCTCAATCTG-TTCAATTATGACCTTATAATGC 744
Query 182747 GATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGG 182806
||||| || || | || |||| ||| ||||| ||| ||||| || ||||| | ||
Sbjct 745 AATTGCATTCTCAAGACCAATTGTTGTTTTCGTTTTTGTATTCCTGATTTATCCACTCGG 804
Query 182807 ACAGTCCTCTTGGTTTTTC-GCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTG- 182864
||| ||||||||| | || ||||||||| | || || || | ||| |
Sbjct 805 TTAGTTTGGTTGGTTTTTTTGAGCTCAGCTTTGGTGTATCAGCTATATTTTGATTCATCC 864
Query 182865 TTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCT 182924
|| || |||| | || || || |||||| | |||| | |||||||| |||||| |
Sbjct 865 TTTTTTTTTCAAGAGTTTCATAATTGGACATTGAACCTAGTTCATATGATTAGAGTTGTT 924
Query 182925 GGTATACTGGGTGGAGCACTGCTCAGTGCTATCCA----TGGTGTCACAGTAGAG---AA 182977
| | || ||| || || |||| |||||| || | || ||| || | | ||
Sbjct 925 GATGTATTGGCTGCGGCTTTGCTA--TGCTATGCAATATTCATGGCACTGTTGTGGAAAA 982
Query 182978 TACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGA 183037
||| || | |||||||||||| ||||| ||||| || || | | ||||| |
Sbjct 983 TACTTTATCTGAAGATGGAGATGGTGCAAATACATTCTGGGCTTTTAACACAACTCAAGC 1042
Query 183038 GGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGC 183097
| || || ||||| ||||| || | | | |||||| | ||||| || ||||||||
Sbjct 1043 TAAAGAAACTTATTCAATGGTCACTGTCAGCTGCTTTTGGCCCCAAATTTTTGGGGTTGC 1102
Query 183098 GTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTG 183157
||| |||||| |||| || || ||||||||||| ||| | || | | | ||
Sbjct 1103 TTTTTCCAATAAATGTTGTTTACATTTCTTTATGTTATTTAAACTAGTAACCGATGCATG 1162
Query 183158 GGTCTCTTCTATTGGGATCA-TTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGA 183216
| | | || || ||| || | || || || | || || ||||| ||||| || |
Sbjct 1163 GATGAGTGCTCTT-GGAGCAGTCGGTCTGGCCGTGAACCTGCGTGCCTATGACTTCATTT 1221
Query 183217 GTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCC 183276
| ||| ||| | | | |||| ||||| | || ||| |||| | | ||| |
Sbjct 1222 CTTTAGAAATTCGCGTACTAGAAAATCCTAAATTTGAG-------ACACCATAAGCATTC 1274
Query 183277 TTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCA 183336
| | ||||| || | ||||||||| |||| || ||||| || ||||||||| | |
Sbjct 1275 TCTTAAATGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTA 1334
Query 183337 TCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373
| |||||||| || |||||||| | || ||||| ||
Sbjct 1335 TATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 1371
>seq198282
Length=4172
Score = 196 bits (216), Expect = 6e-45
Identities = 219/293 (75%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 183055 TGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTT 183114
|||| || || || || |||||||| |||||||| |||||||| ||| |||||| ||||
Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60
Query 183115 GGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGA 183174
|||| || ||||||||||| ||||| || || | ||| | ||| | | || ||||
Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120
Query 183175 TCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAG 183234
| | || || || || || || ||||| ||||| || || ||| || ||| | ||||
Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180
Query 183235 CAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTAC 183294
| ||||||||||| || ||||| |||||||| || ||||| || | ||||| || | |
Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240
Query 183295 GTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAA 183347
|||||||| |||| || ||||| || ||||||||| | || |||||| ||
Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTAAA 293
>seq199332
Length=2940
Score = 154 bits (170), Expect = 2e-32
Identities = 317/463 (68%), Gaps = 15/463 (3%)
Strand=Plus/Minus
Query 182371 TGGACGACTGGGTTAAACGG---GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTAC 182427
|||| |||||| | |||| || || || || ||||| |||||||| || || | |
Sbjct 2527 TGGATGACTGGTT---ACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGC 2471
Query 182428 TTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGA 182487
| || | ||| ||| | ||| | || |||||| |||| || ||| | ||||| ||
Sbjct 2470 TCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTT 2411
Query 182488 GTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCA 182546
||||| || ||||| | || ||||||| | || || ||| ||||| | || ||
Sbjct 2410 CATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTTCTTAACCGCG 2352
Query 182547 GCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 182606
|| || || || |||||| || | | | | ||| | | |||| |||||||| ||
Sbjct 2351 GCAGTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGTCCAGAA 2292
Query 182607 TCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTC 182666
| || || |||| || ||||| ||| | || || || |||| || || ||||||
Sbjct 2291 GCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTTGCTCTC 2232
Query 182667 CACGGTGCCTTCGCTCTCA----TTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CC 182721
||||| || || | || | |||||||||| || ||||||||||||||||| |
Sbjct 2231 CACGGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAACTTGCTCGATC 2173
Query 182722 TGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCA 182781
|| || | | ||||||| ||||| || || || |||| ||| ||||| || || ||
Sbjct 2172 TG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTTGTTT 2114
Query 182782 GTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTT 182824
||| ||||| || ||||| | || ||||| |||||| ||
Sbjct 2113 CTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTT 2071
>seq200167
Length=15642
Score = 141 bits (156), Expect = 1e-28
Identities = 116/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 181446 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 181505
||||| || || ||||||||||| ||||||| ||| || ||||| || |||||||||
Sbjct 10822 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAAC 10763
Query 181506 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTC 181565
|| || ||||| || || |||||||| ||||| || |||||||||||||| || ||||||
Sbjct 10762 ATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTTC 10703
Query 181566 AGTGCAATGCACGGTTCTTTG 181586
||| | ||||| |||||||||
Sbjct 10702 AGTACTATGCATGGTTCTTTG 10682
>seq197127
Length=16832
Score = 123 bits (136), Expect = 3e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 181396 CTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTG 181455
||||||| ||| | ||||||| | |||||||| ||| ||||| | ||||| || |
Sbjct 16832 CTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAG 16773
Query 181456 GCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGC 181515
| ||||||||||| ||||||| |||| | || ||||| || |||||||| || || ||||
Sbjct 16772 GAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGC 16713
Query 181516 ATCCCTTCCACATGTTGGGTGTCGCAGGTGT 181546
| || || |||||||| ||||| || |||||
Sbjct 16712 ACCCATTTCACATGTTAGGTGTAGCTGGTGT 16682
>seq100777
Length=1053
Score = 102 bits (112), Expect = 1e-16
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 182628 TGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT 182687
||||| ||| | ||||| || |||| ||| || ||||| || || || |||| || ||
Sbjct 1053 TGGTGTCAATTAGGGGGTCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATA 994
Query 182688 GGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGAATCAGACCTTACAATGC 182746
||||||||| | | ||||| ||||||||||| ||| || | | ||||||| |||||
Sbjct 993 GGTTTCATGTTACGCCAATTCGAACTTGCTCGATCTG-TTCAATTACGACCTTATAATGC 935
Query 182747 GATTGCTTTTTCTGGTCCTATTGCTGTATTCGT 182779
||||| || ||||| || |||||||| || ||
Sbjct 934 AATTGCATTCTCTGGCCCAATTGCTGTTTTTGT 902
>seq198491
Length=6715
Score = 93.3 bits (102), Expect = 5e-14
Identities = 132/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 182816 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCA 182875
||||||||| |||| |||||| || | || || || | ||| | | || ||||
Sbjct 5665 TTGGTTTTTT-CGCCTAGCTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTTCA 5607
Query 182876 GGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGG 182935
|||||| | || ||||| | ||||| || ||||||||||||||||| ||| || | ||
Sbjct 5606 AGGTTTC-ATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGG 5548
Query 182936 TGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGG 182995
| || |||| | ||||| ||||| | ||| || || ||||| || | |||||||||
Sbjct 5547 CGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGATGG 5488
Query 182996 AGA 182998
||
Sbjct 5487 TGA 5485
>seq198608
Length=9413
Score = 87.8 bits (96), Expect = 2e-12
Identities = 115/158 (73%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 183120 CACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATT 183179
|| ||||||||||| ||||| || || | ||| | ||| | | || |||| | |
Sbjct 2984 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 2925
Query 183180 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAA 183239
|| || || || || || ||||| ||||| || || ||| || ||| | ||||| |||
Sbjct 2924 GGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAA 2865
Query 183240 GATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCT 183277
|||||||| || ||||| |||||||| || ||||| ||
Sbjct 2864 GATCCTGAATTTGAGACTTTCTACACCAA-AACATTCT 2828
>seq198248
Length=3867
Score = 84.2 bits (92), Expect = 3e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 181749 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 181808
|| ||||| || || ||||||||||| || ||||||||||| || | || | |||||
Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332
Query 181809 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCT 181847
||||| || || || ||||| ||||| |||||||| |||
Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCT 293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613079496407840
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