Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq198569 205 1e-47 seq198282 152 7e-32 seq198106 145 1e-29 seq199332 143 4e-29 seq198491 109 8e-19 seq198484 102 1e-16 seq200167 95.1 2e-14 seq198248 89.7 7e-13 seq198608 87.8 3e-12 seq197886 86.0 9e-12 seq198455 84.2 3e-11 >seq198569 Length=8129 Score = 205 bits (226), Expect = 1e-47 Identities = 318/453 (70%), Gaps = 16/453 (4%) Strand=Plus/Plus Query 174795 TATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTA 174854 |||||||| |||||||||||||| || ||||| |||||| |||||||||| ||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 174855 GCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAA 174914 ||||| || || || |||||||| ||| | || || ||| | ||||||| | |||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 174915 GGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTC 174974 || || || || | |||||| | || |||||||| || ||||||| |||| | || Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCC-CTTCCACATGTTGGGAGTCGCAGGTGT 175033 ||||| || || || || ||| | |||||||| ||| | ||||| || || || ||||| Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCG 175093 || | || || | ||| || ||||||||||| |||| || || || || | Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC-CTTGGTAGCT----TCTAATCAG 3074 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || || | || | || |||| || || ||||| || || || Sbjct 3075 GGAAACCAC----------CCCGCTAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAAC 3124 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 ||||| || || || || ||||| || || || || |||||||||||||| ||| || Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGC 175246 ||||||||| || || | || || ||| |||| Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq198282 Length=4172 Score = 152 bits (168), Expect = 7e-32 Identities = 198/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 176545 TGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTT 176604 |||| || || |||||||| ||||| |||||||| |||||||| ||| ||||| |||| Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60 Query 176605 GGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCA 176664 || | || ||||||||||| ||||| || || | ||| | ||| | | |||| Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120 Query 176665 TCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAG 176724 | | || || || || || || ||||| ||||| || || || || ||| | |||| Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180 Query 176725 CAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAA 176784 | ||||||||||| ||||| ||||||||||| || ||||| || | || || || | Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240 Query 176785 GAGCATGGATGGCACCTGTGGATCAACCACATGA 176818 | || |||||||| || ||||| || ||||| Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 274 >seq198106 Length=2703 Score = 145 bits (160), Expect = 1e-29 Identities = 336/500 (67%), Gaps = 15/500 (3%) Strand=Plus/Plus Query 176139 TGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTT 176198 ||| | ||||||||||| || || || || || || || || |||||| | |||| || Sbjct 647 TGGACTTTTGTTGCTCTTCATGGCGCTTTTGCACTAATAGGTTTCATGGTATGTCAATTC 706 Query 176199 GAACTGGCAAGAC----TCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCC 176254 ||||| || | ||| | ||| | || || || || ||||||||| | || Sbjct 707 GAACTTGCTCAATCTGTTCAAT--TAT--GACCTTATAATGCAATTGCATTCTCAAGACC 762 Query 176255 TATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTT 176314 || | ||| || || ||| || || | || ||||| ||| | | | ||||| || Sbjct 763 AATTGTTGTTTTCGTTTTTGTATTCCTGATTTATCCACTCGGTTAGTTTGGTTGGTTTTT 822 Query 176315 T-GCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTA-TTGTTTCTTCAGGGTTTC 176372 | | | | ||||||||| |||| || ||| ||||| | || ||| |||| | || Sbjct 823 TTGAGCTCAGCTTTGGTGTATCAGCTATATTTTGATTCATCCTTTTTTTTTCAAGAGTTT 882 Query 176373 CACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCA 176432 || || |||||| |||||| | |||||||| |||||| || | || | | || || Sbjct 883 CATAATTGGACATTGAACCTAGTTCATATGATTAGAGTTGTTGATGTATTGGCTGCGGCT 942 Query 176433 CTACTATC---TGCAATC--CATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAG 176487 | |||| |||||| |||||| | ||| |||||||| ||| ||||||||||| Sbjct 943 TTGCTATGCTATGCAATATTCATGGCACTGTTGTGGAAAATACTTTATCTGAAGATGGAG 1002 Query 176488 AACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGG 176547 | || || ||| || || | | || || | |||| || ||||| |||| Sbjct 1003 ATGGTGCAAATACATTCTGGGCTTTTAACACAACTCAAGCTAAAGAAACTTATTCAATGG 1062 Query 176548 TTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGC 176607 | |||| | | |||| ||| | ||||| || |||||||| ||| ||||| |||| Sbjct 1063 TCACTGTCAGCTGCTTTTGGCCCCAAATTTTTGGGGTTGCTTTTTCCAATAAATGTTGTT 1122 Query 176608 TTCACTTCTTTATGTTGTTT 176627 | || ||||||||||| ||| Sbjct 1123 TACATTTCTTTATGTTATTT 1142 >seq199332 Length=2940 Score = 143 bits (158), Expect = 4e-29 Identities = 315/468 (67%), Gaps = 7/468 (1%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | ||||| | || | ||| | || ||||| || | Sbjct 2535 TGATATTATGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCT 2476 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || || | ||| ||| | ||| | || || ||| |||| || ||||| ||||| Sbjct 2475 ATTGCTCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGT 2416 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCA 176031 || ||||| || || || | || ||||||| | ||||| ||| ||||| | | Sbjct 2415 AACTTCATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTTCTTAA 2357 Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091 | ||||| || || ||||||||| || | | | | ||| | | |||| ||||||| Sbjct 2356 CCGCGGCAGTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGTC 2297 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 | ||| | || ||||| || || ||| ||| | || || || ||| | ||||||| Sbjct 2296 CAGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTTG 2237 Query 176152 CTCTCCACGGTGCCTTCGCTCT----GATTGGATTCATGCTTCGTCAGTTTGAACTGGCA 176207 |||||||||| || || | || | |||| ||||| |||| |||||||| || Sbjct 2236 CTCTCCACGGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAACTTGCT 2178 Query 176208 AGACTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTT 176267 || || | || || || || || || |||||| || ||| || || || ||| Sbjct 2177 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTT 2118 Query 176268 GTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTT 176315 || ||| || || | || || |||||||| ||| ||||||||| Sbjct 2117 GTTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTT 2070 >seq198491 Length=6715 Score = 109 bits (120), Expect = 8e-19 Identities = 124/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 176324 CTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGAC 176383 |||||| || | || || ||| ||||| | | ||| |||| |||||| | || ||||| Sbjct 5648 CTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTTCAAGGTTTC-ATAATTGGAC 5590 Query 176384 ACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGC 176443 ||||||| || ||||||||||||||||| ||| || |||| | || | |||| || Sbjct 5589 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGCGCGGCTTTGCTATGCGC 5530 Query 176444 AATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGA 176488 || ||||||| || || |||||||| ||| ||||||||| || Sbjct 5529 TATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGATGGTGA 5485 >seq198484 Length=6561 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 175311 AATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGG 175370 ||||||||||| |||||||| ||||| | || | ||||| | ||| | || |||||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 175371 GCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACAC 175430 || ||| | ||||| | ||| ||||| |||||||| |||||||| | ||||| || Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 175431 AACTTCCCACTAGA 175444 |||||||| ||||| Sbjct 6354 AACTTCCCTCTAGA 6367 >seq200167 Length=15642 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 174933 ATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAAC 174992 ||||| | || |||||||| || ||||||| ||| || ||||| || || || ||| Sbjct 10822 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAAC 10763 Query 174993 ATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTC 175052 ||| | |||||||| || |||||||| || || || ||||| || ||||| || ||||| Sbjct 10762 ATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTTC 10703 Query 175053 TCAGCGATGCATGGTTC 175069 | ||||||||||| Sbjct 10702 AGTACTATGCATGGTTC 10686 >seq198248 Length=3867 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 175236 TTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACA 175295 || ||| |||| || ||||| || || |||||||||||||| || | ||| | ||| Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 175296 ATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGT 175352 ||||| ||||| || ||||||||||| |||||||| ||||| | || | |||||| Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 275 >seq198608 Length=9413 Score = 87.8 bits (96), Expect = 3e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 176607 CTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATC 176666 ||||| ||||||||||| ||||| || || | ||| | ||| | | |||| | Sbjct 2987 CTTCATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTA 2928 Query 176667 ATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCA 176726 | || || || || || || ||||| ||||| || || || || ||| | ||||| Sbjct 2927 GTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCG 2868 Query 176727 GAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAA 176773 ||||||||||| ||||| ||||||||||| || ||||| | |||||| Sbjct 2867 GAAGATCCTGAATTTGAGACTTTCTACACCAA-AACATTC-TCTTAA 2823 >seq197886 Length=1258 Score = 86.0 bits (94), Expect = 9e-12 Identities = 178/265 (67%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 175185 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTA 175244 || || |||||||||||||| | | | || || || || | | | || |||||| || Sbjct 334 GGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCCTA 393 Query 175245 GCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTC 175304 | | ||||| || | ||||||| ||||| | | ||| || | |||| || Sbjct 394 ACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTGTC 453 Query 175305 AACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAAC 175364 ||||| |||||||| || |||||||| || || | || |||||| | ||| | || Sbjct 454 AACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTAAG 513 Query 175365 ACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGT-----AATGCATGAGA 175419 || ||||| ||| | ||||| ||| |||| | | |||| || ||||| Sbjct 514 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGAAC 573 Query 175420 GAAATGCACACAACTTCCCACTAGA 175444 | ||||| || |||||||| ||||| Sbjct 574 GTAATGCTCATAACTTCCCTCTAGA 598 >seq198455 Length=6199 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/161 (72%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 176292 CTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTC 176351 || ||| ||||| ||||| ||||| || |||||| || | | || ||| ||||| Sbjct 6040 CTTGGTGAATCTGGTTGGTTTTTTGCGCCAAGCTTTGGCGTATAA-CTATATTTCGATTC 6098 Query 176352 CTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTT 176411 | | ||| |||| || || || || ||||| ||||||| || ||||||||||||||| Sbjct 6099 ATCCTTTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTT 6158 Query 176412 GCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || ||| || |||| | || | |||| || || ||||| Sbjct 6159 GCCGGTGTATTAGGCGCGGCTTTGCTATGCGCTATTCATGG 6199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728102923803640