Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 244 1e-59
seq198282 170 2e-37
seq198106 167 3e-36
seq199332 163 3e-35
seq200167 138 1e-27
seq197127 120 4e-22
seq198608 107 2e-18
seq198491 102 1e-16
seq198258 100 3e-16
seq100777 98.7 1e-15
seq198248 82.4 9e-11
>seq198569
Length=8129
Score = 244 bits (270), Expect = 1e-59
Identities = 330/455 (73%), Gaps = 20/455 (4%)
Strand=Plus/Plus
Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235
|| ||||| ||||||||||||||| | |||||| |||||||| || ||||| |||
Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839
Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295
||||| || ||||| || ||||| || | || || ||| || ||||||| | ||||||
Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899
Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 178355
|| |||||||| | ||||| || || ||||||||||| ||||||| |||| | ||
Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959
Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCC-CTTCCACATGTTGGGTGTCGCAGGTGT 178414
||||| || || ||||| || || |||||||| ||| | ||||| ||||| || |||||
Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019
Query 178415 ATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCG 178474
||| | || || || |||| ||| ||||| ||||| ||||| | ||| || | |
Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTCCTTGGT---AGCTT--CTAATCAG 3074
Query 178475 TGAAACGACTGAAACAG--AATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAG 178532
||||| || | | ||| ||| || || | || || ||||| || ||
Sbjct 3075 GGAAACCAC----CCCGCTAAT----GAA----GGGTACAGATTTGGTCAAGAGGAGGAA 3122
Query 178533 ACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCA 178592
|| || || || || || || ||||| || || || || ||||||||||||||||||
Sbjct 3123 ACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 3182
Query 178593 TTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627
||||||||||| ||||| | || || ||||| ||
Sbjct 3183 TTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217
>seq198282
Length=4172
Score = 170 bits (188), Expect = 2e-37
Identities = 202/274 (74%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 179917 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGT 179976
||||||| || |||||||| ||||| || ||||| || |||| ||||| || || || |
Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60
Query 179977 GGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCA 180036
|| | ||||| || ||||| ||||| || || | ||| |||||| || ||||
Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120
Query 180037 TTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAG 180096
| | ||||| || || ||||| ||||| || || ||||| |||||| || | ||||
Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180
Query 180097 CAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTAC 180156
| |||||||| || |||||||| ||||||||||| |||||||| | ||||| || | |
Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240
Query 180157 GTGCATGGTTGGCACCAGTTGATCAACCACATGA 180190
|||| ||| |||| | ||||| || |||||
Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 274
>seq198106
Length=2703
Score = 167 bits (184), Expect = 3e-36
Identities = 484/739 (65%), Gaps = 16/739 (2%)
Strand=Plus/Plus
Query 179490 TGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT 179549
||||| ||| | || || | |||| ||| || ||||| || || || || || || ||
Sbjct 626 TGGTGTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCATGGCGCTTTTGCACTAATA 685
Query 179550 GGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCAGACCTTACAATGC 179608
||||||||| | | ||||| |||||||||| ||| | | | ||||||| |||||
Sbjct 686 GGTTTCATGGTATGTCAATTCGAACTTGCTCAATCTGTTCAAT-TATGACCTTATAATGC 744
Query 179609 GATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGG 179668
||||| || || | || |||| ||| ||||| ||| ||||| || ||||| | ||
Sbjct 745 AATTGCATTCTCAAGACCAATTGTTGTTTTCGTTTTTGTATTCCTGATTTATCCACTCGG 804
Query 179669 ACAGTCCTCTTGGTTTTTC-GCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGC 179727
||| ||||||||| | || ||||||||| | || || || | ||| | |
Sbjct 805 TTAGTTTGGTTGGTTTTTTTGAGCTCAGCTTTGGTGTATCAGCTATATTTTGATTCATCC 864
Query 179728 TGTTCCTT-CAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCT 179786
| || || || | || || || ||||| | |||| | |||||||| |||||| |
Sbjct 865 TTTTTTTTTCAAGAGTTTCATAATTGGACATTGAACCTAGTTCATATGATTAGAGTTGTT 924
Query 179787 GGTATACTAGGAGGAGCACTGCTCAG---TGC--TATCCATGGAGTTACTGTAGAGAATA 179841
| | || | | | || |||| | ||| ||| ||||| | ||| || ||||
Sbjct 925 GATGTATTGGCTGCGGCTTTGCTATGCTATGCAATATTCATGGCACTGTTGTGGAAAATA 984
Query 179842 CATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAG 179901
| || | |||||||||||| |||||||| || ||| ||| | | || || |
Sbjct 985 CTTTATCTGAAGATGGAGATGGTGCAAATACATTCTGGGCTTTTAACACAACTCAAGCTA 1044
Query 179902 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCAT 179961
|||| |||||||| |||||||||| | | |||| ||| | || || || || |||| |
Sbjct 1045 AAGAAACTTATTCAATGGTCACTGTCAGCTGCTTTTGGCCCCAAATTTTTGGGGTTGCTT 1104
Query 179962 TTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 180021
|||| || || | || | ||||| || ||||| ||| | || | | | |||||
Sbjct 1105 TTTCCAATAAATGTTGTTTACATTTCTTTATGTTATTTAAACTAGTAACCGATGCATGGA 1164
Query 180022 CATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTC 180081
|| |||| | ||||| || | ||||| ||||| || || ||| | |
Sbjct 1165 TGAGTGCTCTTGGAGCAGTCGGTCTGGCCGTGAACCTGCGTGCCTATGACTTCATTTCTT 1224
Query 180082 AGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTC 180141
|| || | | | |||| |||| | |||||| |||||| | ||||||
Sbjct 1225 TAGAAATTCGCGTACTAGAAAATCCTAAATTTGAG-------ACACCATAAGCATTCTCT 1277
Query 180142 TCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTAT 180201
| ||||| || | ||||| ||| |||| | ||||| || ||||| | |||
Sbjct 1278 TAAATGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAT 1337
Query 180202 TCCCAGAAGAAGTTCTGCC 180220
|||| || || ||||| ||
Sbjct 1338 TCCCTGAGGAGGTTCTACC 1356
>seq199332
Length=2940
Score = 163 bits (180), Expect = 3e-35
Identities = 319/463 (69%), Gaps = 15/463 (3%)
Strand=Plus/Minus
Query 179233 TGGACGACTGGGTTAAACGG---GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTAC 179289
|||| |||||| | |||| || || || || ||||| |||||||| || || | |
Sbjct 2527 TGGATGACTGGTT---ACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGC 2471
Query 179290 TTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGA 179349
| || | ||| ||| | ||| | || |||||| |||| || ||| | ||||| ||
Sbjct 2470 TCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTT 2411
Query 179350 GTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCA 179408
||||| || ||||| | || ||||||||| | ||||| ||| ||||| | || ||
Sbjct 2410 CATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTTCTTAACCGCG 2352
Query 179409 GCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 179468
|| || || || |||||| || | | | | ||| | | |||| |||||||| ||
Sbjct 2351 GCAGTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGTCCAGAA 2292
Query 179469 TCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTC 179528
| || || |||| || ||||| ||| | || || || |||| || || ||||||
Sbjct 2291 GCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTTGCTCTC 2232
Query 179529 CACGGTGCCTTCGCTCTCA----TTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CC 179583
||||| || || | || | |||||||||| || ||||||||||||||||| |
Sbjct 2231 CACGGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAACTTGCTCGATC 2173
Query 179584 TGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCA 179643
|| || | ||||||| ||||| || || || |||| ||| ||||| || || ||
Sbjct 2172 TG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTTGTTT 2114
Query 179644 GTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTT 179686
||| ||||| || ||||| | || ||||| |||||| ||
Sbjct 2113 CTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTT 2071
>seq200167
Length=15642
Score = 138 bits (152), Expect = 1e-27
Identities = 115/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 178314 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAAC 178373
||||| || || ||||||||||| ||||||| ||| || ||||| || || ||||||
Sbjct 10822 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAAC 10763
Query 178374 ATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTC 178433
|| || |||||||| || |||||||| ||||| || |||||||| ||||| || ||||||
Sbjct 10762 ATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTTC 10703
Query 178434 AGTGCAATGCACGGTTCTTTG 178454
||| | ||||| |||||||||
Sbjct 10702 AGTACTATGCATGGTTCTTTG 10682
>seq197127
Length=16832
Score = 120 bits (132), Expect = 4e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 178266 GCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGC 178325
|| || ||| || ||||||| | |||||||| |||||||| | ||||| || ||
Sbjct 16830 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGA 16771
Query 178326 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCAC 178385
||||||||||| ||||||| |||| | || ||||| || || ||||| || || ||||||
Sbjct 16770 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCAC 16711
Query 178386 CCCTTCCACATGTTGGGTGTCGCAGGTGT 178414
|| || |||||||| ||||| || |||||
Sbjct 16710 CCATTTCACATGTTAGGTGTAGCTGGTGT 16682
>seq198608
Length=9413
Score = 107 bits (118), Expect = 2e-18
Identities = 121/161 (75%), Gaps = 1/161 (1%)
Strand=Plus/Minus
Query 179979 CTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATT 180038
|||||||| || ||||| ||||| || || | ||| |||||| || |||| |
Sbjct 2987 CTTCATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTA 2928
Query 180039 ATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCA 180098
| ||||| || || ||||| ||||| || || ||||| |||||| || | |||||
Sbjct 2927 GTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCG 2868
Query 180099 GAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCT 180139
|||||||| || |||||||| ||||||||||| ||||||||
Sbjct 2867 GAAGATCCTGAATTTGAGACTTTCTACACCAA-AACATTCT 2828
>seq198491
Length=6715
Score = 102 bits (112), Expect = 1e-16
Identities = 134/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 179678 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCA 179737
||||||||| |||| |||||| || | || || || | ||| | || || ||||
Sbjct 5665 TTGGTTTTTT-CGCCTAGCTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTTCA 5607
Query 179738 GGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 179797
|||||| | || |||||| | ||||| || ||||||||||||||||| ||| || ||||
Sbjct 5606 AGGTTTC-ATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGG 5548
Query 179798 AGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGG 179857
| || |||| | ||||| ||||| | || || || ||||| || | |||||||||
Sbjct 5547 CGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGATGG 5488
Query 179858 AGA 179860
||
Sbjct 5487 TGA 5485
>seq198258
Length=3934
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 178314 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAAC 178373
||||| | || || ||| |||| ||||||| | || | || ||| | || || |||||
Sbjct 3146 ATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTGAGCACAAT 3205
Query 178374 ATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTC 178433
|| || | ||||| || |||||||| ||||| || ||||||||||| || || || ||
Sbjct 3206 ATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCTATTT 3265
Query 178434 AGTGCAATGCACGGTTCTTTGGT 178456
||||| ||||| ||||| || ||
Sbjct 3266 AGTGCTATGCATGGTTCCTTTGT 3288
>seq100777
Length=1053
Score = 98.7 bits (108), Expect = 1e-15
Identities = 115/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 179490 TGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT 179549
||||| ||| | ||||| || |||| ||| || ||||| || || || |||| || ||
Sbjct 1053 TGGTGTCAATTAGGGGGTCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATA 994
Query 179550 GGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGTATCAGACCTTACAATGC 179608
||||||||| | | ||||| ||||||||||| ||| || | ||||||| |||||
Sbjct 993 GGTTTCATGTTACGCCAATTCGAACTTGCTCGATCTG-TTCAATTACGACCTTATAATGC 935
Query 179609 GATTGCTTTTTCTGGTCCTATTGCTGTATTCGT 179641
||||| || ||||| || |||||||| || ||
Sbjct 934 AATTGCATTCTCTGGCCCAATTGCTGTTTTTGT 902
>seq198248
Length=3867
Score = 82.4 bits (90), Expect = 9e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 178617 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 178676
|| ||||| || || ||||||||||| || ||||||||||| || | || | |||||
Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332
Query 178677 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714
||||| || || || ||||| ||||| |||||||| ||
Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATC 294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 604493038250640
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