Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq198569 244 1e-59 seq198282 170 2e-37 seq198106 167 3e-36 seq199332 163 3e-35 seq200167 138 1e-27 seq197127 120 4e-22 seq198608 107 2e-18 seq198491 102 1e-16 seq198258 100 3e-16 seq100777 98.7 1e-15 seq198248 82.4 9e-11 >seq198569 Length=8129 Score = 244 bits (270), Expect = 1e-59 Identities = 330/455 (73%), Gaps = 20/455 (4%) Strand=Plus/Plus Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235 || ||||| ||||||||||||||| | |||||| |||||||| || ||||| ||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295 ||||| || ||||| || ||||| || | || || ||| || ||||||| | |||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 178355 || |||||||| | ||||| || || ||||||||||| ||||||| |||| | || Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCC-CTTCCACATGTTGGGTGTCGCAGGTGT 178414 ||||| || || ||||| || || |||||||| ||| | ||||| ||||| || ||||| Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 178415 ATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCG 178474 ||| | || || || |||| ||| ||||| ||||| ||||| | ||| || | | Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTCCTTGGT---AGCTT--CTAATCAG 3074 Query 178475 TGAAACGACTGAAACAG--AATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAG 178532 ||||| || | | ||| ||| || || | || || ||||| || || Sbjct 3075 GGAAACCAC----CCCGCTAAT----GAA----GGGTACAGATTTGGTCAAGAGGAGGAA 3122 Query 178533 ACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCA 178592 || || || || || || || ||||| || || || || |||||||||||||||||| Sbjct 3123 ACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 3182 Query 178593 TTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627 ||||||||||| ||||| | || || ||||| || Sbjct 3183 TTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq198282 Length=4172 Score = 170 bits (188), Expect = 2e-37 Identities = 202/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 179917 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGT 179976 ||||||| || |||||||| ||||| || ||||| || |||| ||||| || || || | Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60 Query 179977 GGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCA 180036 || | ||||| || ||||| ||||| || || | ||| |||||| || |||| Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120 Query 180037 TTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAG 180096 | | ||||| || || ||||| ||||| || || ||||| |||||| || | |||| Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180 Query 180097 CAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTAC 180156 | |||||||| || |||||||| ||||||||||| |||||||| | ||||| || | | Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240 Query 180157 GTGCATGGTTGGCACCAGTTGATCAACCACATGA 180190 |||| ||| |||| | ||||| || ||||| Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 274 >seq198106 Length=2703 Score = 167 bits (184), Expect = 3e-36 Identities = 484/739 (65%), Gaps = 16/739 (2%) Strand=Plus/Plus Query 179490 TGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT 179549 ||||| ||| | || || | |||| ||| || ||||| || || || || || || || Sbjct 626 TGGTGTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCATGGCGCTTTTGCACTAATA 685 Query 179550 GGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCAGACCTTACAATGC 179608 ||||||||| | | ||||| |||||||||| ||| | | | ||||||| ||||| Sbjct 686 GGTTTCATGGTATGTCAATTCGAACTTGCTCAATCTGTTCAAT-TATGACCTTATAATGC 744 Query 179609 GATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGG 179668 ||||| || || | || |||| ||| ||||| ||| ||||| || ||||| | || Sbjct 745 AATTGCATTCTCAAGACCAATTGTTGTTTTCGTTTTTGTATTCCTGATTTATCCACTCGG 804 Query 179669 ACAGTCCTCTTGGTTTTTC-GCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGC 179727 ||| ||||||||| | || ||||||||| | || || || | ||| | | Sbjct 805 TTAGTTTGGTTGGTTTTTTTGAGCTCAGCTTTGGTGTATCAGCTATATTTTGATTCATCC 864 Query 179728 TGTTCCTT-CAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCT 179786 | || || || | || || || ||||| | |||| | |||||||| |||||| | Sbjct 865 TTTTTTTTTCAAGAGTTTCATAATTGGACATTGAACCTAGTTCATATGATTAGAGTTGTT 924 Query 179787 GGTATACTAGGAGGAGCACTGCTCAG---TGC--TATCCATGGAGTTACTGTAGAGAATA 179841 | | || | | | || |||| | ||| ||| ||||| | ||| || |||| Sbjct 925 GATGTATTGGCTGCGGCTTTGCTATGCTATGCAATATTCATGGCACTGTTGTGGAAAATA 984 Query 179842 CATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAG 179901 | || | |||||||||||| |||||||| || ||| ||| | | || || | Sbjct 985 CTTTATCTGAAGATGGAGATGGTGCAAATACATTCTGGGCTTTTAACACAACTCAAGCTA 1044 Query 179902 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCAT 179961 |||| |||||||| |||||||||| | | |||| ||| | || || || || |||| | Sbjct 1045 AAGAAACTTATTCAATGGTCACTGTCAGCTGCTTTTGGCCCCAAATTTTTGGGGTTGCTT 1104 Query 179962 TTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 180021 |||| || || | || | ||||| || ||||| ||| | || | | | ||||| Sbjct 1105 TTTCCAATAAATGTTGTTTACATTTCTTTATGTTATTTAAACTAGTAACCGATGCATGGA 1164 Query 180022 CATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTC 180081 || |||| | ||||| || | ||||| ||||| || || ||| | | Sbjct 1165 TGAGTGCTCTTGGAGCAGTCGGTCTGGCCGTGAACCTGCGTGCCTATGACTTCATTTCTT 1224 Query 180082 AGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTC 180141 || || | | | |||| |||| | |||||| |||||| | |||||| Sbjct 1225 TAGAAATTCGCGTACTAGAAAATCCTAAATTTGAG-------ACACCATAAGCATTCTCT 1277 Query 180142 TCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTAT 180201 | ||||| || | ||||| ||| |||| | ||||| || ||||| | ||| Sbjct 1278 TAAATGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAT 1337 Query 180202 TCCCAGAAGAAGTTCTGCC 180220 |||| || || ||||| || Sbjct 1338 TCCCTGAGGAGGTTCTACC 1356 >seq199332 Length=2940 Score = 163 bits (180), Expect = 3e-35 Identities = 319/463 (69%), Gaps = 15/463 (3%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGG---GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTAC 179289 |||| |||||| | |||| || || || || ||||| |||||||| || || | | Sbjct 2527 TGGATGACTGGTT---ACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGC 2471 Query 179290 TTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGA 179349 | || | ||| ||| | ||| | || |||||| |||| || ||| | ||||| || Sbjct 2470 TCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTT 2411 Query 179350 GTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCA 179408 ||||| || ||||| | || ||||||||| | ||||| ||| ||||| | || || Sbjct 2410 CATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTTCTTAACCGCG 2352 Query 179409 GCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 179468 || || || || |||||| || | | | | ||| | | |||| |||||||| || Sbjct 2351 GCAGTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGTCCAGAA 2292 Query 179469 TCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTC 179528 | || || |||| || ||||| ||| | || || || |||| || || |||||| Sbjct 2291 GCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTTGCTCTC 2232 Query 179529 CACGGTGCCTTCGCTCTCA----TTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CC 179583 ||||| || || | || | |||||||||| || ||||||||||||||||| | Sbjct 2231 CACGGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAACTTGCTCGATC 2173 Query 179584 TGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCA 179643 || || | ||||||| ||||| || || || |||| ||| ||||| || || || Sbjct 2172 TG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTTGTTT 2114 Query 179644 GTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTT 179686 ||| ||||| || ||||| | || ||||| |||||| || Sbjct 2113 CTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTT 2071 >seq200167 Length=15642 Score = 138 bits (152), Expect = 1e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 178314 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAAC 178373 ||||| || || ||||||||||| ||||||| ||| || ||||| || || |||||| Sbjct 10822 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAAC 10763 Query 178374 ATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTC 178433 || || |||||||| || |||||||| ||||| || |||||||| ||||| || |||||| Sbjct 10762 ATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTTC 10703 Query 178434 AGTGCAATGCACGGTTCTTTG 178454 ||| | ||||| ||||||||| Sbjct 10702 AGTACTATGCATGGTTCTTTG 10682 >seq197127 Length=16832 Score = 120 bits (132), Expect = 4e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 178266 GCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGC 178325 || || ||| || ||||||| | |||||||| |||||||| | ||||| || || Sbjct 16830 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGA 16771 Query 178326 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCAC 178385 ||||||||||| ||||||| |||| | || ||||| || || ||||| || || |||||| Sbjct 16770 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCAC 16711 Query 178386 CCCTTCCACATGTTGGGTGTCGCAGGTGT 178414 || || |||||||| ||||| || ||||| Sbjct 16710 CCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq198608 Length=9413 Score = 107 bits (118), Expect = 2e-18 Identities = 121/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 179979 CTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATT 180038 |||||||| || ||||| ||||| || || | ||| |||||| || |||| | Sbjct 2987 CTTCATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTA 2928 Query 180039 ATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCA 180098 | ||||| || || ||||| ||||| || || ||||| |||||| || | ||||| Sbjct 2927 GTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCG 2868 Query 180099 GAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCT 180139 |||||||| || |||||||| ||||||||||| |||||||| Sbjct 2867 GAAGATCCTGAATTTGAGACTTTCTACACCAA-AACATTCT 2828 >seq198491 Length=6715 Score = 102 bits (112), Expect = 1e-16 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 179678 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCA 179737 ||||||||| |||| |||||| || | || || || | ||| | || || |||| Sbjct 5665 TTGGTTTTTT-CGCCTAGCTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTTCA 5607 Query 179738 GGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 179797 |||||| | || |||||| | ||||| || ||||||||||||||||| ||| || |||| Sbjct 5606 AGGTTTC-ATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGG 5548 Query 179798 AGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGG 179857 | || |||| | ||||| ||||| | || || || ||||| || | ||||||||| Sbjct 5547 CGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGATGG 5488 Query 179858 AGA 179860 || Sbjct 5487 TGA 5485 >seq198258 Length=3934 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 178314 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAAC 178373 ||||| | || || ||| |||| ||||||| | || | || ||| | || || ||||| Sbjct 3146 ATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTGAGCACAAT 3205 Query 178374 ATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTC 178433 || || | ||||| || |||||||| ||||| || ||||||||||| || || || || Sbjct 3206 ATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCTATTT 3265 Query 178434 AGTGCAATGCACGGTTCTTTGGT 178456 ||||| ||||| ||||| || || Sbjct 3266 AGTGCTATGCATGGTTCCTTTGT 3288 >seq100777 Length=1053 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 179490 TGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT 179549 ||||| ||| | ||||| || |||| ||| || ||||| || || || |||| || || Sbjct 1053 TGGTGTCAATTAGGGGGTCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATA 994 Query 179550 GGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGTATCAGACCTTACAATGC 179608 ||||||||| | | ||||| ||||||||||| ||| || | ||||||| ||||| Sbjct 993 GGTTTCATGTTACGCCAATTCGAACTTGCTCGATCTG-TTCAATTACGACCTTATAATGC 935 Query 179609 GATTGCTTTTTCTGGTCCTATTGCTGTATTCGT 179641 ||||| || ||||| || |||||||| || || Sbjct 934 AATTGCATTCTCTGGCCCAATTGCTGTTTTTGT 902 >seq198248 Length=3867 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 178617 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 178676 || ||||| || || ||||||||||| || ||||||||||| || | || | ||||| Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 178677 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714 ||||| || || || ||||| ||||| |||||||| || Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATC 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604493038250640