Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq197427 129 8e-25 seq180626 122 1e-22 seq181835 116 5e-21 >seq197427 Length=19924 Score = 129 bits (142), Expect = 8e-25 Identities = 579/911 (64%), Gaps = 15/911 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| || ||||| | ||||||||||| || || || || | ||| || Sbjct 13670 TTCTGGTACTCTCCAACCCTCTTCTCGAAAAAGTTTGTCTTCCCCTGCAAACTGATCAGC 13729 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||||||||| | |||| || ||||| | | || || | | | Sbjct 13730 TCCATCCAATCAAACGGATTCTTCGCATCGTACATTTTTCCATACCCCAAAGCACCCAAC 13789 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | ||||| || || ||||| || ||| |||||| || | |||||| || | || Sbjct 13790 AGCCTATCAGCGACGAATTCAATATATTGGCTCATCAAATCGCCATTCATGCCCACCAGA 13849 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | || || || || | |||||| | ||||| || || || || | | || Sbjct 13850 GCACACGGCAGCGCGTCGCAGACAAACTCCCTCTCGATCTCCACCGCATCGGCCACAATT 13909 Query 39566 GATGTTACTACCTCATCACTCGGTGGATG---CAATAAATGTTTAAACATTAAGCAGGCG 39622 | ||| ||| || ||| | || || || | | ||| |||||||| Sbjct 13910 CCCCTGACTCGCTCCTCGCTCAGCTTCTGAGTCAGCAACTCGT---ACAGCAAGCAGGCA 13966 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || || || | ||| || ||||| || || ||||| || || || | |||||| Sbjct 13967 AAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAGGC 14026 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741 || | || |||||||||||||| || || || ||| ||| | || || ||||| || || Sbjct 14027 ATCAACCCGCGCTTTTTGAGCCAGAAGATCGC-GCAGAAGCTCCCGGAGAAGAAAATCCC 14085 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTATGTATCCAC 39799 ||| || ||||| ||||| | || ||| || | ||| | || | |||||| Sbjct 14086 TTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCG--CCACCGTCGATCCAC 14143 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 || | ||||| | || ||||| | || ||||| || || || || || | || || Sbjct 14144 TTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGC 14203 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 | || || | | ||| || | || | || | || || || |||||||| || Sbjct 14204 CGGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTACATTTCGGAG 14263 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 |||||||| || || || || || || |||||||| ||| || |||| | || ||| Sbjct 14264 TGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCTACCTGGACC 14323 Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAAT 40039 || || || | |||| || || || || || ||| ||||| || || Sbjct 14324 TCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCGGCGAAGAAG 14383 Query 40040 GCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAGTCATTG 40096 || | || || | || || | | || ||| |||| || | ||||| | Sbjct 14384 GCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCCCAGTGGCGG 14443 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 | || || | ||| ||||||||||| ||||| || || || ||||| || |||||| Sbjct 14444 AGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCTTTCTTGTAC 14503 Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCA 40216 || | ||| || | | || | |||||||| || || | || ||| ||| | Sbjct 14504 ATTTCCCAGATTTGTGGGTACTTGATTGGAAACATGCAGAAGCGATCTGGGTTTGGCGTC 14563 Query 40217 AGGATGGGTTC 40227 |||| |||||| Sbjct 14564 AGGAGGGGTTC 14574 >seq180626 Length=5659 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | |||||||| |||| | |||| ||||| |||| | |||| Sbjct 2941 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTAGCATTGGAACCACACCA 2882 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| |||||||| ||| | || ||||||||| || ||| Sbjct 2881 TTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCACGAATATTATGAACAGAG 2822 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || || ||| | |||||| ||||| || ||||| || Sbjct 2821 ACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 2762 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || ||||| |||||| ||||| | | ||| |||||| Sbjct 2761 CCTTCAATGCTGTCATCTTTCATGCACACCAAAAAGCAGCTA 2720 >seq181835 Length=5898 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 69771 GGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCC 69830 |||||||| |||| | || | ||||| |||| ||||||||| ||| | ||||||||||| Sbjct 3445 GGCAGTGTCATTAAAAACACGTAGCATGGGAACAATACCATTGGATGTCCCATTTGTTCC 3386 Query 69831 AGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCAT 69890 | ||||| || ||| | || || |||||| || ||| | ||| |||||||| || Sbjct 3385 ACGGATATAGCTGCCTGTAGCACGTATATTATGAACAGAGACACCAATTCCTCCCGCTGA 3326 Query 69891 TTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTAT 69950 || |||| ||||| ||||| || |||||||| || || || ||||||||| | Sbjct 3325 CTTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATATTCCTTCAATACTATCATCTTT 3266 Query 69951 CATGTTAAGAAGAAAACAGCTA 69972 |||| | | ||| |||||| Sbjct 3265 CATGCACACCAAAAAGCAGCTA 3244 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553 |||||||||| | || || ||| || || || |||||| |||| | || || ||| Sbjct 4030 TTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCCTGGAG 3971 Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGAT 69613 ||||||||||| | ||| ||||| | || | | | ||||| ||||||||| |||| Sbjct 3970 CCTCATTTGGACAAAACAAAGACCATTCCCTATTACCTTCAACTCTTTTCATAAAAAGAT 3911 Query 69614 CGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 | || ||||||||||| ||| ||||| |||| | || ||||| Sbjct 3910 CAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685189784968920