Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq197427 147 2e-30 >seq197427 Length=19924 Score = 147 bits (162), Expect = 2e-30 Identities = 242/344 (70%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 ||||| || || ||||| ||||| || || || || || ||||||||||| || || | Sbjct 14298 TTTTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCTTGCTC 14239 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || |||||||||| ||| |||||||| | || | || | ||||| || || | Sbjct 14238 GAGTCGTACATCAAGGATTCTAACGAGAAGGACCGGCTTTTCCACGCGATCGAGACGATC 14179 Query 44063 CCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 ||| ||| ||| | || || | |||||||| || ||||| | || ||||| Sbjct 14178 CCTTGCGTGGAAA-AGAAGGCCAAGTGGGCCCTCAAGTGGATCGACGGTGGCGAGTCTTT 14120 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTG 44180 | || ||| | || || ||||| || ||||| |||||||| || || | | | || Sbjct 14119 CGCCGAGCGAATCGTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTCTG 14060 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 || | || || ||| | || || || || ||||||||||||||||| || || || |||| Sbjct 14059 CG-CGATCTTCTGGCTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAACGAGT 14001 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || | || |||||||| || ||||||||||| |||||| Sbjct 14000 TGATCTCAAGAGACGAAGGCTTGCACTGCGATTTTGCCTGCTTG 13957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396486217669015