Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq194543 100 2e-16 seq155647 95.1 1e-14 seq116321 93.3 4e-14 seq160375 84.2 2e-11 >seq194543 Length=10949 Score = 100 bits (110), Expect = 2e-16 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | || | || | ||| || ||||| || || ||||| ||| Sbjct 3254 TGCCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCGG 3195 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || |||| ||||||||||| || || | || |||||||| |||||||| | Sbjct 3194 CGAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAG 3135 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| |||||| ||||| | | || | ||| || | | ||| | Sbjct 3134 GGATTCCTTCCTTATCCTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGA 3075 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 | || || || || | || || || || |||||||| ||||| ||||| ||| ||||| Sbjct 3074 CCTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT--CTGTTAAAA 3017 Query 27259 AT 27260 || Sbjct 3016 AT 3015 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||||| || |||| ||| ||||| || || || || ||||| || || ||| Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | ||| | ||||| | ||| |||||||| |||| | |||||| ||||| || || Sbjct 3648 -AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGG 3590 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| ||| ||| || | | || | ||| || | | || || Sbjct 3589 AATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTCTCGAC 3530 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | || || | |||||| || || ||||| || ||||||||||| Sbjct 3529 TTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482 >seq155647 Length=3035 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | ||| || || || || || ||||||||| | | | || || Sbjct 2224 CGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCGACCG 2165 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || ||||||||||| || ||| | ||||| || || || ||||| || | || || || Sbjct 2164 TCCTCGAGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCTTG 2105 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | | || | ||||| | || |||||| || |||||||| Sbjct 2104 TCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGATTCAACCTCGAGAGTTATG 2045 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || ||||| || ||||| ||||| Sbjct 2044 GTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 2010 >seq116321 Length=1411 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || |||||||||||| | | | || | || ||| Sbjct 844 ACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCGAGGGTACGGCCATCCTCG 785 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| |||||| | ||||| | ||| || || || || | |||||||| || Sbjct 784 AGCTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCTTGA 725 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||||| || || || | || |||| || Sbjct 724 ATCTTAGCCTTCACGTTATCGATGGTGTCTGAACTCTCGACCTCCAAGGTAATAGTCTTT 665 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||||||||| ||||| Sbjct 664 CCGGTGAGGGTTTTCACAAAGATCTGCAT 636 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || || ||||||||||| ||| || | | || |||| ||| Sbjct 1072 ACCAAATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCCAAGGTCCGACCGTCCTCG 1013 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| |||||| | ||||| | ||| || || || || | |||||| || || | Sbjct 1012 AGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 953 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | | || | || |||| | || || || | ||| || | || Sbjct 952 ATCTTAGCCTTGACGTTATCGATGGTATCTGAGCTCTCCACCTCCAAAGTGATGGTCTTT 893 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || || || ||||| ||||| Sbjct 892 CCGGTCAAGGTCTTGACGAAGATCTGCAT 864 >seq160375 Length=3367 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| |||||||| || | | || | || || Sbjct 716 ACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCCTCA 775 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || |||||| | ||||| | ||| || ||||| || | ||||| || || | Sbjct 776 AGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGG 835 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | ||||| || | ||| || | ||| Sbjct 836 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAAGTGATTGTCTTG 895 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || ||||||||||| ||||| Sbjct 896 CCGGTCAAGGTCTTCACAAAGATCTGCAT 924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423897571085736