Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq189432 138 1e-27
seq181835 120 4e-22
seq190564 89.7 6e-13
seq180626 84.2 3e-11
seq169593 84.2 3e-11
>seq189432
Length=7906
Score = 138 bits (152), Expect = 1e-27
Identities = 285/420 (68%), Gaps = 8/420 (2%)
Strand=Plus/Plus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542
|| || ||||| | |||||||| || ||||| || | || || || | |||||
Sbjct 354 TCCAGAATATCTGCACGATTAGTCGCTGCAATTACAATGATACCCGTGTTTCCTTCAAAC 413
Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602
|||||||| || || | || ||||||| || || ||||| || |||||| | | |
Sbjct 414 CCATCCATTTCTGTCAATAGCTGATTAAGGGTCTGCTCTCTTTCGTCATTTCCA--CCTC 471
Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660
| | |||| | | |||| || || |||||||| ||||||| |||||||| || |
Sbjct 472 CGATTCCAGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAAGACAATGCAAG 531
Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720
| ||| || ||| ||| || ||||| || || || |||||| ||||||||||
Sbjct 532 GAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACTCTGGAGGCACCAACACCAACAA 591
Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGC 11778
||||||||||||| | | | | || | || || || || || || ||| || ||
Sbjct 592 ACATCTCCACAAACTCGGAGCCTGA--AATGGAGAAAAAAGGAACTCCTGCTTCTCCAGC 649
Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838
|| || ||| || ||||||||||| || ||||| |||| | ||||| | |||
Sbjct 650 AATTGCCTTGGCCAGAAGGGTCTTTCCGGTTCCTGGGGGACCCACAAGAAGCACTCCTTT 709
Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898
||||| ||||||| || | ||||| || | ||| ||||| ||||| | |||
Sbjct 710 AGGGATACGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCTC 769
>seq181835
Length=5898
Score = 120 bits (132), Expect = 4e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999
||| || |||||||| ||||||||||| || || || | ||| ||| ||||| | ||
Sbjct 2862 CTGGGGCCTTGGTGTGCCAGCATTGAAAAGTGTGGGCGATGCATGAGTGAACCATCTCTG 2803
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
||||||| || || |||| | || |||||||| || ||| ||||| || || ||
Sbjct 2802 GGACATCAAGTGATACGTCTGAATTACTGAATCAATATCATCCTTATGGATCCCTATGGC 2743
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118
|| | ||| ||||||| ||||| |||||| | | |||| || || || | || |
Sbjct 2742 AACTCTCATTAACATGTGTTGTGGCCTTTCCACAACCTTCCCATGGA-CCTTTAACAGGT 2684
Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166
| | ||||||||||||||| ||||||||| || | ||| ||||||
Sbjct 2683 ATGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCC 2636
>seq190564
Length=8368
Score = 89.7 bits (98), Expect = 6e-13
Identities = 188/281 (67%), Gaps = 12/281 (4%)
Strand=Plus/Plus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| |||||||| || || | | |||||||| || ||||| ||||||||||| |
Sbjct 5512 AAACCATCCATTTCCGTTAACAGCTGATTAATAGTCTGTTCCCTCTCATCATT------C 5565
Query 11600 ATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653
||||||| || | | ||| | || ||||||||||||||||| || || |||
Sbjct 5566 CCACCACCAAGCCCCGCCCCTCTTTGTCTCCCAACCGCATCAATCTCATCTATAAACACA 5625
Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713
|| || || ||| || | ||||| | ||| |||||||| || ||||||
Sbjct 5626 ATGCAAGGCGCCTTTGACTTCGCCTTCTCAAACAAATCTCGAACCCTAGACGCCCCCACA 5685
Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773
|| ||||||| |||||| || | | || | ||| | ||| || ||| | ||
Sbjct 5686 CCCACAAACAACTCCACGAACTCCGACGCGGCGCAGGAAAAGAACGGCACACCGGCCTCT 5745
Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
||||| | || || || | ||||| || || ||||||||
Sbjct 5746 CCCGCCACTGCCCGAGCCAAAAGGGTTTTCCCAGTACCTGG 5786
>seq180626
Length=5659
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| || ||||||| || |||||||| ||||| || | ||| ||| ||||| | ||
Sbjct 2495 TGGGGCCTTGGTGCCCCTGCATTGAAAAGGGTAGGCGATGCATGAGTGAACCATCTCTGA 2436
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|||||| | || |||| | |||||||||| || ||| |||||| || | |
Sbjct 2435 GACATCAAATGATAGGTCTTGATAGCAGAATCAATATCATCCTTGTGGATCCCAACAGAA 2376
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119
|||| ||| ||||||| || || |||| | | | || | || || | | || ||
Sbjct 2375 ACCCTCATCAACATGTGTTGAGGCCTTTCAACAACTTTTCCTTGGA-CCTTCAACAGGTA 2317
Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
| ||||||||||||||| |||||||||| || | || |||| ||
Sbjct 2316 GGATCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCGAAGTCACG 2269
>seq169593
Length=4175
Score = 84.2 bits (92), Expect = 3e-11
Identities = 244/368 (66%), Gaps = 6/368 (2%)
Strand=Plus/Plus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| |||||||| || || || | || |||| |||||| || ||||||||||| ||
Sbjct 335 AAACCCATCCATTTCAGTCAGCAGCTGGTTAAGTGTTTGCTCCCTCTCATCATTCCCTCC 394
Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658
| | ||| | | | ||| | || || ||||| |||||||||||||| || | ||
Sbjct 395 CCCAATACCGGTCCCTCTCTGCCTCCCGACAGCATCTATCTCATCAATGAAAACCAAGCA 454
Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718
|| |||| | || | | || | || | || ||| || || || || ||
Sbjct 455 CGGCGAATTTGCCTTTGCCTTGTTGAATAAGTCCCTCACTCTTGAAGCTCCGACTCCCAC 514
Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCG 11777
||||||||| | || | || | ||| | || || ||| || ||| | ||| || |
Sbjct 515 AAACATCTCAATGAACTCTGAACCGGAG-AGTGAGAAGAAAGGCACACCGGCTTCTCCAG 573
Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837
| ||||| ||| || || ||||| || |||||||| || | || || | |||
Sbjct 574 CAATGGCCTTGGCCAGCAGTGTCTTACCAGTACCTGGTGGTCCAACTAGTAGCACTCCTT 633
Query 11838 GGGGGAT-CTTGGCACCACTTC-CAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAAT 11895
|| || |||| | ||||| | |||| | ||| ||||| ||| ||||| || || ||
Sbjct 634 TTGGAATCCTTGCCCCCACTGCAGCAAATTTTTCTGGGGTT-CTT-AGAAACTCAACTAT 691
Query 11896 CTCTTCAA 11903
||||| ||
Sbjct 692 CTCTTGAA 699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626460326368800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |