Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq189432 138 1e-27 seq181835 120 4e-22 seq190564 89.7 6e-13 seq180626 84.2 3e-11 seq169593 84.2 3e-11 >seq189432 Length=7906 Score = 138 bits (152), Expect = 1e-27 Identities = 285/420 (68%), Gaps = 8/420 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 || || ||||| | |||||||| || ||||| || | || || || | ||||| Sbjct 354 TCCAGAATATCTGCACGATTAGTCGCTGCAATTACAATGATACCCGTGTTTCCTTCAAAC 413 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | || ||||||| || || ||||| || |||||| | | | Sbjct 414 CCATCCATTTCTGTCAATAGCTGATTAAGGGTCTGCTCTCTTTCGTCATTTCCA--CCTC 471 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||||| |||||||| || | Sbjct 472 CGATTCCAGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAAGACAATGCAAG 531 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || ||| ||| || ||||| || || || |||||| |||||||||| Sbjct 532 GAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACTCTGGAGGCACCAACACCAACAA 591 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGC 11778 ||||||||||||| | | | | || | || || || || || || ||| || || Sbjct 592 ACATCTCCACAAACTCGGAGCCTGA--AATGGAGAAAAAAGGAACTCCTGCTTCTCCAGC 649 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 || || ||| || ||||||||||| || ||||| |||| | ||||| | ||| Sbjct 650 AATTGCCTTGGCCAGAAGGGTCTTTCCGGTTCCTGGGGGACCCACAAGAAGCACTCCTTT 709 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||||| ||||||| || | ||||| || | ||| ||||| ||||| | ||| Sbjct 710 AGGGATACGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCTC 769 >seq181835 Length=5898 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || |||||||| ||||||||||| || || || | ||| ||| ||||| | || Sbjct 2862 CTGGGGCCTTGGTGTGCCAGCATTGAAAAGTGTGGGCGATGCATGAGTGAACCATCTCTG 2803 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||||| || || |||| | || |||||||| || ||| ||||| || || || Sbjct 2802 GGACATCAAGTGATACGTCTGAATTACTGAATCAATATCATCCTTATGGATCCCTATGGC 2743 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 || | ||| ||||||| ||||| |||||| | | |||| || || || | || | Sbjct 2742 AACTCTCATTAACATGTGTTGTGGCCTTTCCACAACCTTCCCATGGA-CCTTTAACAGGT 2684 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | ||||||||||||||| ||||||||| || | ||| |||||| Sbjct 2683 ATGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCC 2636 >seq190564 Length=8368 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/281 (67%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || ||||| ||||||||||| | Sbjct 5512 AAACCATCCATTTCCGTTAACAGCTGATTAATAGTCTGTTCCCTCTCATCATT------C 5565 Query 11600 ATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||||||| || | | ||| | || ||||||||||||||||| || || ||| Sbjct 5566 CCACCACCAAGCCCCGCCCCTCTTTGTCTCCCAACCGCATCAATCTCATCTATAAACACA 5625 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 || || || ||| || | ||||| | ||| |||||||| || |||||| Sbjct 5626 ATGCAAGGCGCCTTTGACTTCGCCTTCTCAAACAAATCTCGAACCCTAGACGCCCCCACA 5685 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 || ||||||| |||||| || | | || | ||| | ||| || ||| | || Sbjct 5686 CCCACAAACAACTCCACGAACTCCGACGCGGCGCAGGAAAAGAACGGCACACCGGCCTCT 5745 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||||| | || || || | ||||| || || |||||||| Sbjct 5746 CCCGCCACTGCCCGAGCCAAAAGGGTTTTCCCAGTACCTGG 5786 >seq180626 Length=5659 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||||| || |||||||| ||||| || | ||| ||| ||||| | || Sbjct 2495 TGGGGCCTTGGTGCCCCTGCATTGAAAAGGGTAGGCGATGCATGAGTGAACCATCTCTGA 2436 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | || |||| | |||||||||| || ||| |||||| || | | Sbjct 2435 GACATCAAATGATAGGTCTTGATAGCAGAATCAATATCATCCTTGTGGATCCCAACAGAA 2376 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| ||||||| || || |||| | | | || | || || | | || || Sbjct 2375 ACCCTCATCAACATGTGTTGAGGCCTTTCAACAACTTTTCCTTGGA-CCTTCAACAGGTA 2317 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | ||||||||||||||| |||||||||| || | || |||| || Sbjct 2316 GGATCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCGAAGTCACG 2269 >seq169593 Length=4175 Score = 84.2 bits (92), Expect = 3e-11 Identities = 244/368 (66%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || || | || |||| |||||| || ||||||||||| || Sbjct 335 AAACCCATCCATTTCAGTCAGCAGCTGGTTAAGTGTTTGCTCCCTCTCATCATTCCCTCC 394 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | | ||| | | | ||| | || || ||||| |||||||||||||| || | || Sbjct 395 CCCAATACCGGTCCCTCTCTGCCTCCCGACAGCATCTATCTCATCAATGAAAACCAAGCA 454 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || |||| | || | | || | || | || ||| || || || || || Sbjct 455 CGGCGAATTTGCCTTTGCCTTGTTGAATAAGTCCCTCACTCTTGAAGCTCCGACTCCCAC 514 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCG 11777 ||||||||| | || | || | ||| | || || ||| || ||| | ||| || | Sbjct 515 AAACATCTCAATGAACTCTGAACCGGAG-AGTGAGAAGAAAGGCACACCGGCTTCTCCAG 573 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | ||||| ||| || || ||||| || |||||||| || | || || | ||| Sbjct 574 CAATGGCCTTGGCCAGCAGTGTCTTACCAGTACCTGGTGGTCCAACTAGTAGCACTCCTT 633 Query 11838 GGGGGAT-CTTGGCACCACTTC-CAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAAT 11895 || || |||| | ||||| | |||| | ||| ||||| ||| ||||| || || || Sbjct 634 TTGGAATCCTTGCCCCCACTGCAGCAAATTTTTCTGGGGTT-CTT-AGAAACTCAACTAT 691 Query 11896 CTCTTCAA 11903 ||||| || Sbjct 692 CTCTTGAA 699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626460326368800