Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq189432 102 1e-16 seq183423 96.9 4e-15 >seq189432 Length=7906 Score = 102 bits (112), Expect = 1e-16 Identities = 227/336 (68%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 ||| || ||||| || || ||||| || || |||| ||| ||||| | ||||| Sbjct 353 GTCCAGAATATCTGCACGATTAGTCGCTGCAATTACAATGATACCCGTGTTTCCTTCAAA 412 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214 |||||||| || ||||| || ||||| | ||| || || | ||| ||||| || | | Sbjct 413 CCCATCCATTTCTGTCAATAGCTGATTAAGGGTCTGCTCTCTTTCGTCATTTCCA--CCT 470 Query 14215 ACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | | || | | | |||| || || || ||||||||||| | || || || || Sbjct 471 CCGATTCCAGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 530 Query 14273 GGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACA 14332 || ||| || ||| || || | ||| || ||||| |||||| ||||| ||| Sbjct 531 GGAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACTCTGGAGGCACCAACACCAACA 590 Query 14333 AACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGC 14391 |||||||||||||| | || | | ||| || | || || || || | ||| || || Sbjct 591 AACATCTCCACAAACTCGGAGCCTGAA-ATGGAGAAAAAAGGAACTCCTGCTTCTCCAGC 649 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || ||| || |||||||| || || ||||| Sbjct 650 AATTGCCTTGGCCAGAAGGGTCTTTCCGGTTCCTGG 685 >seq183423 Length=6220 Score = 96.9 bits (106), Expect = 4e-15 Identities = 233/347 (67%), Gaps = 12/347 (3%) Strand=Plus/Plus Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 11921 || || ||| | ||| ||||| ||||| |||||| ||| || || |||||| | Sbjct 5534 ACCCCATTCCACCCAAGATCCCCCTATGCCGTCTCCAAGTGCGCAGCCCATTGGTACACT 5593 Query 11922 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAG 11981 ||| ||||| ||| |||| |||||||| || || ||| || ||||||||||| || Sbjct 5594 GTGAACTACCGCGAAGCCTACGGTCTCTTCGCCTGTAATGGGATCCTCTTCAACCATGAA 5653 Query 11982 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGA----TGGTATCAAAC 12036 || || || |||||| | | || ||||| ||| ||||| ||| ||| | | Sbjct 5654 TCCCCGCGGCGTGGCGAGAACTTTGTGACCCGGAAAATCACACGAGCCGTGGGCCGGATC 5713 Query 12037 AA-ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGAC 12095 || |||| ||| | |||| | || || || || || | | || | ||| ||| Sbjct 5714 AAGATCG-GGCTG--CAGAGCAAACTCTTT---TTAGGAAATTTGCAGGCGGCGAGAGAC 5767 Query 12096 TGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCG 12155 ||||| |||| ||||| || || ||||||||||| | || || || || || | Sbjct 5768 TGGGGGTTTGCCGGAGACTACGTGGAGGCCATGTGGCTGATGCTACAGCAGGAGAAGCCA 5827 Query 12156 GACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTT 12202 || || || || || || |||| |||| | ||| | || |||||| Sbjct 5828 GATGACTACGTGGTGGCAACGGAGGAGGCTCACACAGTGGAGGAGTT 5874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616887542720680