Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq189432 102 1e-16
seq183423 96.9 4e-15
>seq189432
Length=7906
Score = 102 bits (112), Expect = 1e-16
Identities = 227/336 (68%), Gaps = 6/336 (2%)
Strand=Plus/Plus
Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154
||| || ||||| || || ||||| || || |||| ||| ||||| | |||||
Sbjct 353 GTCCAGAATATCTGCACGATTAGTCGCTGCAATTACAATGATACCCGTGTTTCCTTCAAA 412
Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214
|||||||| || ||||| || ||||| | ||| || || | ||| ||||| || | |
Sbjct 413 CCCATCCATTTCTGTCAATAGCTGATTAAGGGTCTGCTCTCTTTCGTCATTTCCA--CCT 470
Query 14215 ACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272
| | || | | | |||| || || || ||||||||||| | || || || ||
Sbjct 471 CCGATTCCAGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 530
Query 14273 GGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACA 14332
|| ||| || ||| || || | ||| || ||||| |||||| ||||| |||
Sbjct 531 GGAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACTCTGGAGGCACCAACACCAACA 590
Query 14333 AACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGC 14391
|||||||||||||| | || | | ||| || | || || || || | ||| || ||
Sbjct 591 AACATCTCCACAAACTCGGAGCCTGAA-ATGGAGAAAAAAGGAACTCCTGCTTCTCCAGC 649
Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427
|| || ||| || |||||||| || || |||||
Sbjct 650 AATTGCCTTGGCCAGAAGGGTCTTTCCGGTTCCTGG 685
>seq183423
Length=6220
Score = 96.9 bits (106), Expect = 4e-15
Identities = 233/347 (67%), Gaps = 12/347 (3%)
Strand=Plus/Plus
Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 11921
|| || ||| | ||| ||||| ||||| |||||| ||| || || |||||| |
Sbjct 5534 ACCCCATTCCACCCAAGATCCCCCTATGCCGTCTCCAAGTGCGCAGCCCATTGGTACACT 5593
Query 11922 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAG 11981
||| ||||| ||| |||| |||||||| || || ||| || ||||||||||| ||
Sbjct 5594 GTGAACTACCGCGAAGCCTACGGTCTCTTCGCCTGTAATGGGATCCTCTTCAACCATGAA 5653
Query 11982 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGA----TGGTATCAAAC 12036
|| || || |||||| | | || ||||| ||| ||||| ||| ||| | |
Sbjct 5654 TCCCCGCGGCGTGGCGAGAACTTTGTGACCCGGAAAATCACACGAGCCGTGGGCCGGATC 5713
Query 12037 AA-ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGAC 12095
|| |||| ||| | |||| | || || || || || | | || | ||| |||
Sbjct 5714 AAGATCG-GGCTG--CAGAGCAAACTCTTT---TTAGGAAATTTGCAGGCGGCGAGAGAC 5767
Query 12096 TGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCG 12155
||||| |||| ||||| || || ||||||||||| | || || || || || |
Sbjct 5768 TGGGGGTTTGCCGGAGACTACGTGGAGGCCATGTGGCTGATGCTACAGCAGGAGAAGCCA 5827
Query 12156 GACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTT 12202
|| || || || || || |||| |||| | ||| | || ||||||
Sbjct 5828 GATGACTACGTGGTGGCAACGGAGGAGGCTCACACAGTGGAGGAGTT 5874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 616887542720680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |