Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq189432 127 2e-24 seq181835 116 4e-21 seq169593 114 2e-20 seq197427 95.1 1e-14 seq190564 87.8 2e-12 >seq189432 Length=7906 Score = 127 bits (140), Expect = 2e-24 Identities = 281/415 (68%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 || || ||||| | ||||| ||||| || || |||| ||||| |||||| || ||| Sbjct 354 TCCAGAATATCTGCACGATTAGTCGCTGCAATTACAATGATACCCGTGTTTCCTT--CAA 411 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 | |||||||| |||||||| || || |||| || || || | ||| ||||| | | Sbjct 412 ACCCATCCATTTCTGTCAATAGCTGATTAAGGGTCTGCTCTCTTTCGTCATTTCCA--CC 469 Query 9675 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | |||| | | |||| || || |||||||| ||||||| ||||| ||||| Sbjct 470 TCCGATTCCAGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAAGACAATGCA 529 Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| || || || || ||||| || || | ||| || |||||||| Sbjct 530 AGGAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACTCTGGAGGCACCAACACCAAC 589 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||||||||| | | | | ||| || | || || || || | ||| || | Sbjct 590 AAACATCTCCACAAACTCGGAGCCTGAA-ATGGAGAAAAAAGGAACTCCTGCTTCTCCAG 648 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| || ||| ||||| ||||| || || ||||| |||| | || || | ||| Sbjct 649 CAATTGCCTTGGCCAGAAGGGTCTTTCCGGTTCCTGGGGGACCCACAAGAAGCACTCCTT 708 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || || ||| ||| || | | |||||||| | ||| ||||| ||||| Sbjct 709 TAGGGATACGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 763 >seq181835 Length=5898 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 || |||| |||| || ||| ||||| ||||||||||||||| | || || | || | Sbjct 2635 AGGGACTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCATACCTGTTAAAG 2694 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || |||| | |||||| ||||| ||||||| ||| | || ||||| || || Sbjct 2695 G-TCCATGGGAAGGTTGTGGAAAGGCCACAACACATGTTAATGAGAGTTGCCATAGGGAT 2753 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| ||| || |||||||| || | |||| || || ||||||||| | ||| Sbjct 2754 CCATAAGGATGATATTGATTCAGTAATTCAGACGTATCACTTGATGTCCCAGAGATGGTT 2813 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || ||| ||| | || || || ||||||||||| |||||||| ||||| Sbjct 2814 CACTCATGCATCGCCCACACTTTTCAATGCTGGCACACCAAGGCCCCA 2861 >seq169593 Length=4175 Score = 114 bits (126), Expect = 2e-20 Identities = 316/473 (67%), Gaps = 15/473 (3%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| | ||||| | || | || | |||||| || ||| | |||||| || Sbjct 246 CGGTCAAACCTGCCTGGCCTTAGCAAAGCTTGATCAAGAATTTCAGGCCTATTCGTGGCA 305 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 || ||||||| | || |||||| | ||| |||||||| || |||| || |||| Sbjct 306 GCAATGACAATGACTCCACTGTTTCC--ACTAAACCCATCCATTTCAGTCAGCAGCTGGT 363 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9701 ||| ||||| |||| ||||||||| || | | ||| | | | ||| | || | Sbjct 364 TAAGTGTTTGCTCCCTCTCATCATTCCCTCCCCCAATACCGGTCCCTCTCTGCCTCCCGA 423 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 9761 | ||||| |||||||||||||| || | ||| || |||| | || | || | Sbjct 424 CAGCATCTATCTCATCAATGAAAACCAAGCACGGCGAATTTGCCTTTGCCTTGTTGAATA 483 Query 9762 GATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 |||| ||| |||| || || || || ||||||||||| | || | || |||| Sbjct 484 AGTCCCT--CACTCTTGAAGCTCCGACTCCCACAAACATCTCAATGAACTCTGAACCGGA 541 Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 | || ||| || ||| | ||| || |||||||| ||| || || |||||||| Sbjct 542 GAGTGAGAAGAAAGGCACACCGGCTTCTCCAGCAATGGCCTTGGCCAGCAGTGTCTTACC 601 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT-CTTGGCGCCACTTC--CAAA 9936 |||||||| || | || || | ||| |||||| |||| | ||||| | |||| Sbjct 602 AGTACCTGGTGGTCCAACTAGTAGCACTCCTTTTGGAATCCTTGCCCCCACTGCAGCAAA 661 Query 9937 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCAT-CTTTG 9988 | | ||| |||| ||| ||||| || || || |||| || || | ||||| Sbjct 662 -TTTTTCTGGGGTT-CTT-AGAAACTCAACTATCTCTTGAAAGTCTTGCTTTG 711 >seq197427 Length=19924 Score = 95.1 bits (104), Expect = 1e-14 Identities = 186/273 (68%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 94683 GTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTG 94742 ||| || |||||| | |||||| | | ||| || | || ||| | || | || || Sbjct 14233 GTACATCAAGGATTCTAACGAGAAGGACCGGCTTTTCCACGCGATCGAGACGATCCCTTG 14174 Query 94743 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGC 94802 | ||||||| || | ||||| | |||||| | || | | || || | || || Sbjct 14173 CGTGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGATCGA--CGGTGGCGAGT-CTTTCGC 14117 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 |||||| || | || ||||| || || || || || |||||||| || ||||||||| Sbjct 14116 CGAGCGAATCGTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTCTGCGC 14057 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || | |||||||| ||||| || | ||||| || | ||||||||||||| | || Sbjct 14056 GATCTTCTGGCTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAACGAGTTGAT 13997 Query 94923 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| | ||||| || | ||| || ||||| Sbjct 13996 CTCAAGAGACGAAGGCTTGCACTGCGATTTTGC 13964 >seq190564 Length=8368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 215/325 (66%), Gaps = 22/325 (7%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||| || || || || || |||||||| ||||||| ||||||||| | Sbjct 5512 AAACCATCCATTTCCGTTAACAGCTGATTAATAGTCTGTTCCCTCTCATCATTCCC---- 5567 Query 9674 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 ||||||| || | | ||| | || || |||||||||||||| || || || Sbjct 5568 --ACCACCAAGCCCCGCCCCTCTTTGTCTCCCAACCGCATCAATCTCATCTATAAACACA 5625 Query 9728 ATGCATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGC 9782 ||||| || |||| ||||| | ||||| | ||| || || | || | Sbjct 5626 ATGCAAGGCGCCTTTGA-CTTCGCCTTC----TCAAACAAATCTCGAACCCTAGACGCCC 5680 Query 9783 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAG 9842 ||||||| ||||||| |||||| || | | |||| || | ||| || ||| | Sbjct 5681 CCACACCCACAAACAACTCCACGAACTCCGACGCGGCGCAGGAAAAGAACGGCACACCGG 5740 Query 9843 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 9902 || ||||| | || || || | ||| || || || |||||||| ||| | | | Sbjct 5741 CCTCTCCCGCCACTGCCCGAGCCAAAAGGGTTTTCCCAGTACCTGGTGGCCCCACCAAAA 5800 Query 9903 GGGCACCTCGTGGAATCTTGGCGCC 9927 | ||| |||||||||||| || Sbjct 5801 GACACCCTTTTGGAATCTTGGCTCC 5825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581801167975720