Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq197427 147 2e-30 >seq197427 Length=19924 Score = 147 bits (162), Expect = 2e-30 Identities = 299/439 (68%), Gaps = 4/439 (1%) Strand=Plus/Minus Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 ||||||||| || ||||||| ||||| ||||||||||| || ||| || || | Sbjct 14417 ACGACGAGCGACACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCTGACGGTATCG 14358 Query 59737 TGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGT 59796 | |||| || | | | | || ||||| |||||| | || |||||| | | | Sbjct 14357 TCTTGGAGAACCTGGCCGGCAGGTTCATGAAGGAGGTCCAGGTAGCTGAGGCCAGAGCCT 14298 Query 59797 TCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATC 59855 | |||| | || ||| || |||| ||||||||||| | |||| ||| || || Sbjct 14297 TTTACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACAGCCTCTTGCTC 14239 Query 59856 GATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TC 59914 || || |||||||| | | ||||||| | || |||| || || |||||| || Sbjct 14238 GAGTCGTACATCAAGGATTCTAACGAGAAGGACCGGCTTTTCCACGCGATCGAGACGATC 14179 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATT 59974 || || || || | || || | |||||| | ||||||| ||| | || || Sbjct 14178 CCTTGC-GTGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGATCGACGGTGGCGAGTCTTT 14120 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | || || | || ||||| ||||| ||||| || |||||||| || ||||| Sbjct 14119 CGCCGAGCGAATCGTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTCTG 14060 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || ||||||||||||||||| || | ||||| || ||| |||||||||||| | Sbjct 14059 CGCGATCTTCTGGCTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAACGAGTT 14000 Query 60095 GATTTCCCGGGACGAGGGC 60113 ||| || | ||||| ||| Sbjct 13999 GATCTCAAGAGACGAAGGC 13981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547152096118320