Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq197427 129 6e-25 seq195916 95.1 1e-14 seq61551 89.7 6e-13 seq197323 86.0 7e-12 seq159777 82.4 8e-11 seq111144 82.4 8e-11 >seq197427 Length=19924 Score = 129 bits (142), Expect = 6e-25 Identities = 494/760 (65%), Gaps = 22/760 (3%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||| ||| || |||||||| |||||||| | ||| ||| ||||||| Sbjct 13676 TACTCTCCAACCCTCTTCTCGAAAAAGTTTGTCTTCCCCTGCAAACTGATCAGCTCCATC 13735 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTC--TCCCCAAACTGTGCCATGAGGC 74580 || || || || ||||| ||| |||| || ||| | ||| || ||| || | Sbjct 13736 CAATCAAACGGATTCTTCGCATCGTACATTT--TTCCATACCCCAAAGCACCCAACAGCC 13793 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 ||| || || |||| ||| || || |||| | ||| |||||| | || | Sbjct 13794 TATCAGCGACGAATTCAATATATTGGCTCATCAAATCGCCATTCATGCCCACCAGAGCAC 13853 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGG--ACAAT-CT 74697 ||||||| || ||| || |||||| ||||| | ||| | | ||| || ||||| | Sbjct 13854 ACGGCAGCGCGTCGCAGACAAACTCCCTCTCGATCTCC--ACCGCATCGGCCACAATTCC 13911 Query 74698 TGTGAATGTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAAC 74756 ||| | || | || ||| | |||| ||| ||| |||||| Sbjct 13912 CCTGACTCGCTCCTC--GCTCAGCTTCTGAGTCAGCAACTCGTACAGCAAGCAGGCAAAA 13969 Query 74757 TCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATA 74816 || ||| ||||||| ||||| ||||| || || || || | | |||||||| Sbjct 13970 TCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAGGCATC 14029 Query 74817 AGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCG 74876 | || ||||| || | ||| ||||| || |||||| || |||||| || |||||| Sbjct 14030 AACCCGCGCTTTTTGAGCCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAAATCCCTTCG 14089 Query 74877 ACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC-ATCCAAGTC 74933 || || |||||||| || | || | ||||| | ||| | ||| ||||| | Sbjct 14090 ACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGAC---TCGCCACCGTCGATCCACTTG 14146 Query 74934 TGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCT 74992 | ||||| | || || | ||| |||| |||| || |||||||| ||||| || | Sbjct 14147 AGGGCCCACTTGGCCTT-CTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGCCG 14205 Query 74993 TGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATG 75052 ||||||| | | |||||||| | | || | || || |||| | || || || Sbjct 14206 GTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTACATTTCGGAGTG 14265 Query 75053 AATCGACTCGTTGAACGACTGGTACGC-GTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111 || |||| || ||| | | | || ||| || | | ||||| || | ||| || | Sbjct 14266 GATGTTCTCGATGG-CGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCTACCTGGACCT 14324 Query 75112 CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAG 75171 |||| || | | | | ||||||| |||||| ||||| ||||||||||| || | Sbjct 14325 CCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCGGCGAAGAAGG 14384 Query 75172 CCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG 75211 | || || |||| ||||| ||||| ||||| || || Sbjct 14385 CGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAG 14424 >seq195916 Length=12792 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4293 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4234 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 4233 TGAGCTACGAAAGC 4220 >seq61551 Length=494 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 407 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 348 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 347 TGAGCTACGAAAGC 334 >seq197323 Length=18625 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 16849 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16908 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 16909 TGAGCTATGAAAGC 16922 >seq159777 Length=3320 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 2021 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 1962 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 1961 AACTGAGCTACGAGAGC 1945 >seq111144 Length=1281 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 330 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 389 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 390 AACTGAGCTACGAGAGC 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545846571439400