Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq198569 230 3e-55 seq197127 138 1e-27 seq198484 122 1e-22 seq200167 120 4e-22 seq197639 111 2e-19 seq197886 98.7 1e-15 seq198286 82.4 9e-11 seq131584 82.4 9e-11 >seq198569 Length=8129 Score = 230 bits (254), Expect = 3e-55 Identities = 312/432 (72%), Gaps = 20/432 (5%) Strand=Plus/Plus Query 176439 TTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGT 176498 ||| ||||| || | ||||||||||||| | | | || ||||| |||||||| ||| Sbjct 2779 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGT 2838 Query 176499 TGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCA 176558 |||||| || || || || | || || | || |||||| | |||||||| | ||||| Sbjct 2839 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCA 2898 Query 176559 AGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGT 176618 |||| ||| |||||||| |||||||| || || || ||||| |||||||| ||| | || Sbjct 2899 AGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGT 2958 Query 176619 ATTCCAAGCAGAGCACAACATTCTAATGCACCCA-TTCCATATGCTTGGAGTAGCAGGTG 176677 |||||| || |||||||| || || ||||||||| ||| ||||| | || ||||| |||| Sbjct 2959 ATTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTG 3018 Query 176678 TGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTA 176737 | || | || ||||| ||| || ||||| || |||| || ||| || | | Sbjct 3019 TATTGGACGGCTCTCTATTCAATGCTATGCATGG-TTCCTTGGTA--GCTT--CTAATCA 3073 Query 176738 GAGAGACAA--CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGA 176795 | || || | ||| || ||| || |||| ||| || ||||| || || Sbjct 3074 GGGAAACCACCCCGCTAATGAA------------GGGTACAGATTTGGTCAAGAGGAGGA 3121 Query 176796 GACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTC 176855 || || || ||||||||||| || ||||| ||||| || | |||||||| |||||| Sbjct 3122 AACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 3181 Query 176856 TTTCAATAACTC 176867 |||||| ||||| Sbjct 3182 TTTCAACAACTC 3193 >seq197127 Length=16832 Score = 138 bits (152), Expect = 1e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 176530 GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGC 176589 || |||||| | |||||||| | ||||||||| ||| |||||||| |||||||| || Sbjct 16830 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGA 16771 Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649 || || ||||| |||||||| ||| | |||||||| || |||||||| || || |||||| Sbjct 16770 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCAC 16711 Query 176650 CCATTCCATATGCTTGGAGTAGCAGGTGT 176678 ||||| || ||| | || ||||| ||||| Sbjct 16710 CCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq198484 Length=6561 Score = 122 bits (134), Expect = 1e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 176956 AACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGG 177015 || |||||||| |||||||| ||||| | || | || || ||| ||| ||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 177016 GGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 177075 | |||||| |||||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 177076 AACTTCCCACTTGACCTTGCTGCTGCA 177102 |||||||| || ||||| || ||| || Sbjct 6354 AACTTCCCTCTAGACCTAGCGGCTACA 6380 >seq200167 Length=15642 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 176574 TGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCA 176633 |||||||||||| || || || ||||| |||||||| ||| |||||||| || ||||| Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 176634 CAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCT 176693 |||||| || ||||||||||| || ||| | || ||||| ||||| |||||||| || || Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 176694 TTTC 176697 ||| Sbjct 10706 GTTC 10703 >seq197639 Length=228 Score = 111 bits (122), Expect = 2e-19 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 177001 GTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCAC 177060 || ||| ||| |||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct 204 GTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 145 Query 177061 GAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 || ||||||||||| |||||||| || ||||| || ||| Sbjct 144 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCT 106 >seq197886 Length=1258 Score = 98.7 bits (108), Expect = 1e-15 Identities = 188/277 (68%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 176828 TTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCC 176887 |||| || | |||||||| |||| | |||| ||||| || | | || ||||||| Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391 Query 176888 TTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCAT 176947 | | | | || || | | |||| ||| | || | ||| || || |||| Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451 Query 176948 TCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTC 177007 ||||||| || ||||| || |||||||| || || | || || ||| || ||| Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTA 511 Query 177008 CTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTT-----ATGCACGA 177062 || |||| |||||| |||||| ||| ||| |||||| | ||||| || || || Sbjct 512 AGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGA 571 Query 177063 GCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 ||||||||||| |||||||| || ||||| | |||| Sbjct 572 ACGTAATGCTCATAACTTCCCTCTAGACCTAGTTGCT 608 >seq198286 Length=4222 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 4/78 (5%) Strand=Plus/Plus Query 177026 TTAACCGTGCAAACCTTGGTATGGAAGTTATGC----ACGAGCGTAATGCTCACAACTTC 177081 ||| |||| | |||||||||||||||||||||| |||| ||||||||||| |||||| Sbjct 2891 TTAGCCGTTCTAACCTTGGTATGGAAGTTATGCATGAACGAACGTAATGCTCATAACTTC 2950 Query 177082 CCACTTGACCTTGCTGCT 177099 || || ||||| || ||| Sbjct 2951 CCTCTAGACCTAGCGGCT 2968 >seq131584 Length=1887 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 177033 TGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 177092 ||| ||||||||||||||||||||||| || ||||||||||| |||||||| || ||||| Sbjct 1887 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601984132632960