Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq194543 87.8 1e-12
seq176217 84.2 2e-11
>seq194543
Length=10949
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || || ||||| |||||||| ||| ||||| | || ||||| ||| |
Sbjct 3482 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATTACCTTGGAAGTCGAGAGCTCT 3541
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || | ||| ||||| ||||| || |||||||| |||| || |
Sbjct 3542 GATACTATCGATAAT--GTCAAGGCCAAAATCCAAGATAAAGAAGGGATTCCTCCAGATC 3599
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || || ||||||||||| || || ||||| || | || | | | | ||||| |
Sbjct 3600 AGCAGCGTTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGGCGGACCCTAGCAGATTATA 3659
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| ||||| || ||| || |||||| |||| || | ||| | || ||
Sbjct 3660 ATATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTTGAGGGGTGG 3708
>seq176217
Length=4970
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/214 (69%), Gaps = 10/214 (5%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || ||||| || || || || ||| || || | || ||||||||| |
Sbjct 2746 ATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTCT 2687
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
||| ||||| | |||||| || || ||||| ||||| |||| |
Sbjct 2686 GAC-----ACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAG 2632
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| |||||| || | ||||||||||| || ||| | || |||| || | | | ||||||
Sbjct 2631 ACCAGCAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATT 2572
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998
|||| |||||||| || ||| | ||||||||
Sbjct 2571 ACAATATCCAAAAGGAATCCACCCTCCATTTGGT 2538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354994104974181
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |