Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq194543 87.8 1e-12 seq176217 84.2 2e-11 >seq194543 Length=10949 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| |||||||| ||| ||||| | || ||||| ||| | Sbjct 3482 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATTACCTTGGAAGTCGAGAGCTCT 3541 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||||| || |||||||| |||| || | Sbjct 3542 GATACTATCGATAAT--GTCAAGGCCAAAATCCAAGATAAAGAAGGGATTCCTCCAGATC 3599 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || ||||||||||| || || ||||| || | || | | | | ||||| | Sbjct 3600 AGCAGCGTTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGGCGGACCCTAGCAGATTATA 3659 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || ||| || |||||| |||| || | ||| | || || Sbjct 3660 ATATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTTGAGGGGTGG 3708 >seq176217 Length=4970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| || || || || ||| || || | || ||||||||| | Sbjct 2746 ATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTCT 2687 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||| | |||||| || || ||||| ||||| |||| | Sbjct 2686 GAC-----ACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAG 2632 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||| || | ||||||||||| || ||| | || |||| || | | | |||||| Sbjct 2631 ACCAGCAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATT 2572 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| |||||||| || ||| | |||||||| Sbjct 2571 ACAATATCCAAAAGGAATCCACCCTCCATTTGGT 2538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354994104974181