Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq176217 100 2e-16 seq181690 95.1 1e-14 seq194543 86.0 5e-12 seq155647 82.4 7e-11 >seq176217 Length=4970 Score = 100 bits (110), Expect = 2e-16 Identities = 168/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 39046 AATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATA 39105 ||| | | || ||| ||||| | || | ||||||||| || ||| || ||||| ||| Sbjct 2508 AATATTTGCATGCCACCTCTGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATA 2567 Query 39106 TTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC 39165 || ||||||||||| || || |||| || || || ||||| ||||| ||||| | ||| Sbjct 2568 TTGTAATCGGCAAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGC 2627 Query 39166 TGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC- 39224 ||||| | ||| | | || |||||| ||| || ||||| | | | || || Sbjct 2628 TGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATTGTGTCA 2687 Query 39225 --GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGC 39282 ||| || || || | ||||| ||||||| ||||| || || || || |||||| Sbjct 2688 GAGCT---TTCGACCTCTAAAGTGATGGTTTTTCCTGTCAGGGTCTTCACGAATATTTGC 2744 Query 39283 AT 39284 || Sbjct 2745 AT 2746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| ||||| || || ||||||||||| || || | || || Sbjct 2766 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCG 2825 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || ||||| ||||| ||||| | |||||||| | ||| | | || |||||| | Sbjct 2826 AGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 2885 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTT 39252 || || ||||| | | | || || ||| || || |||| ||||| || Sbjct 2886 ATCTTAGCTTTGACGTTATCAATAGTGTCAGAGCT---TTCGACCTCCAAAGTGATGGTT 2942 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 ||||| ||||| ||||| || ||||| ||||||| || Sbjct 2943 TTTCCTGTCAGGGTTTTCACGAAGATCTGCATCTGTA 2979 >seq181690 Length=5866 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || ||||| || | ||||| || || || || ||||| ||||| ||||| ||| Sbjct 2963 CCGCCCCTTAAACGCAGAACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCA 3022 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || ||| |||| ||||||||||| || ||||| ||||| | |||||||| |||||| Sbjct 3023 AGGGTGCGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3082 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGA---CT 39232 | | ||| || | | ||| | | || | | ||| | | | ||||| ||| || Sbjct 3083 -ATCCCCTCCTTAT-CTTGAATCTTTGCCTTAACGTTGTCAATGGTATC---CGAACTCT 3137 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || | || || | || || || || ||||| ||||| |||||||| Sbjct 3138 CCACTTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCAT 3189 >seq194543 Length=10949 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| |||||| ||||| || |||||||| || || || |||| || |||||| Sbjct 3228 TGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGCGAGCGTACGGCCGTCCTCGAGCTGT 3169 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || ||||||||||| || | || | | || || ||| ||| || Sbjct 3168 TTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTT- 3110 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || || ||| | | | |||||| || || || | ||||| | || || || Sbjct 3109 TGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCAGT 3050 Query 39261 CAGCGTTTTAACAAAGATTTGCATCT 39286 || ||||| || ||||| ||||||| Sbjct 3049 TAGGGTTTTCACGAAGATCTGCATCT 3024 >seq155647 Length=3035 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | ||| | ||||| || ||||| ||| || || || || || ||||| Sbjct 2236 CCACCTCTGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCT 2177 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 || || || |||| || ||||||||||| || || || || || ||||||| ||||||| Sbjct 2176 AGGGTCCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGG 2117 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || |||||| ||| || |||| | | | || || || || || Sbjct 2116 -ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGATTCAAC 2058 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||| ||||| ||| Sbjct 2057 CTCGAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATTTTT 2006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428497519877339