Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq194317 131 1e-25 seq194543 122 6e-23 seq155647 113 3e-20 seq181690 107 1e-18 seq176217 107 1e-18 seq162333 91.5 1e-13 seq160375 86.0 4e-12 seq101090 82.4 5e-11 >seq194317 Length=10706 Score = 131 bits (144), Expect = 1e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||| | || || ||||| || || || || ||||| ||| Sbjct 1535 AAGATGCAGATCTTCGTCAAAACCTTAACCGGGAAAACCATAACCCTAGAGGTTGAATCC 1476 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| |||| | | ||||||||||| |||| ||||| Sbjct 1475 TCTGACACCATCGACAATGTCAAAGCAAAGA-TCCAGGACAAAGAAGGCATACCACCAGA 1417 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||||| | || || |||||||| || ||||| |||| | | ||| ||| ||| || Sbjct 1416 CCAACAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGAACTCTAGCCGACTA 1357 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || ||||| Sbjct 1356 CAACATCCAGAAGGAATCCAC 1336 >seq194543 Length=10949 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || |||||||| ||||| || || | | Sbjct 3254 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAAAGCTCC 3313 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || ||||| ||||| |||||| | || |||||||| Sbjct 3314 GACACTATCGACAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAG 3373 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | |||| || || || || ||||||||||| | || ||||||| |||||| ||| Sbjct 3374 CAGAGGCTAATCTTCGCTGGAAAGCAACTGGAAGATGGGCGGACTTTAGCCGATTATAAC 3433 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 3434 ATCCAGAAGGAATCCAC 3450 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || || ||||| ||||| || || | | Sbjct 3026 ATGCAGATCTTCGTGAAAACCCTAACTGGTAAGACAATCACCCTCGAGGTCGAAAGCTCC 3085 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | ||| ||| || || || ||||| | || || ||||| Sbjct 3086 GATACTATCGACAACGTGAAAGCAAAGATCCAGGATAAGGAAGGAATCCCTCCGGATCAG 3145 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| ||||| || ||||| || || |||| || || | | |||||||||| Sbjct 3146 CAGCGTCTAATCTTTGCTGGAAAACAGCTCGAGGACGGCCGTACGCTCGCCGATTACAAC 3205 Query 23791 ATACAAAAAGAGTCCAC 23807 ||||| ||||||||||| Sbjct 3206 ATACAGAAAGAGTCCAC 3222 >seq155647 Length=3035 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| || || || |||||||| ||||| ||| Sbjct 2007 AAAATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACCATAACTCTCGAGGTTGAATCC 2066 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | || || ||||| ||||| | || || || Sbjct 2067 TCGGACACCATCGACAATGTCAAGGC-TAAGATCCAGGACAAGGAAGGCATCCCACCGGA 2125 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || || | || || || |||||||| || || |||| || || ||| ||| || Sbjct 2126 CCAGCAACGCCTCATCTTCGCTGGCAAACAGCTCGAGGACGGTCGGACCCTAGCCGACTA 2185 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 2186 CAACATCCAGAAGGAGTCGAC 2206 >seq181690 Length=5866 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || || || |||||| | ||||| || | | Sbjct 2733 ATGCAGATTTTCGTGAAGACATTGACAGGGAAGACCATCACTTTGGAAGTGGAGAACTCT 2674 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || ||| ||| |||||||| ||| | ||||||||||| Sbjct 2673 GACACTATTGATAACGTGAAGTCAAAGATTCAAGACAAAGAGGGTATTCCGCCAGATCAG 2614 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || || ||||| |||| || || | | || || ||| Sbjct 2613 CAGAGATTGATCTTTGCAGGAAAGCAGCTGGAGGACGGCCGTACCCTCGCTGACTATAAC 2554 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || ||||| | ||||| || Sbjct 2553 ATCCAAAAGGAATCCACCCTTCATTTGGT 2525 >seq176217 Length=4970 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || |||||||| |||||| | || || || | | Sbjct 2974 ATGCAGATCTTCGTGAAAACCCTGACAGGAAAAACCATCACTTTGGAGGTCGAAAGCTCT 2915 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | ||| || || ||||| ||||| | || ||||| || Sbjct 2914 GACACTATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 2855 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||||||||| ||||| || || | || || | | |||||||||| Sbjct 2854 CAAAGGCTTATCTTTGCCGGCAAGCAACTCGAGGATGGCCGTACCCTTGCCGATTACAAC 2795 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 2794 ATCCAAAAGGAGTCAAC 2778 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || |||||||| |||||| | || || || | | Sbjct 2746 ATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTCT 2687 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || || ||||| ||||| | || ||||| || Sbjct 2686 GACACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 2627 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||||||||| ||||| || |||| || || | | ||||||||| Sbjct 2626 CAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATTACAAT 2567 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || ||||| | ||||| || Sbjct 2566 ATCCAAAAGGAATCCACCCTCCATTTGGT 2538 >seq162333 Length=3517 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || || ||||||||| | || || || || ||||||||| | ||| Sbjct 3022 GACAAGGAAGGCATTCCACCTGATCAACAGAGATTGATTTTCGCTGGCAAACAATTAGAA 3081 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || ||| | | || |||||||| ||||| |||||||| | ||||||||||| Sbjct 3082 GATGGTCGGACTCTTGCTGACTACAACATCCAAAAGGAGTCCACCCTTCATTTAGTTTTG 3141 Query 23824 AGG 23826 ||| Sbjct 3142 AGG 3144 >seq160375 Length=3367 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| | || || || | | Sbjct 1380 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAAAGCTCC 1321 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || |||||| ||||| || || | || ||||| || Sbjct 1320 GACACCATTGATAACGTGAAGGCTAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 1261 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || || || ||| |||| |||| || || || | ||||||||| Sbjct 1260 CAGAGGCTTATTTTCGCTGGAAAGCAATTGGAGGACGGCCGTACCTTGGCTGATTACAAC 1201 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1200 ATCCAGAAGGAGTCCAC 1184 >seq101090 Length=1060 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || || |||| ||| | || || || || ||||||||| ||||| Sbjct 306 GACAAGGAAGGCATTCCACCTGATCCACAAAGATTGATTTTCGCTGGCAAACAATTGGAA 247 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || ||| | | || |||||||| ||||| ||||| || | ||||||||||| Sbjct 246 GATGGTCGGACTCTTGCGGACTACAACATCCAAAAGGAGTCAACCCTTCATTTAGTTTTG 187 Query 23824 AGG 23826 ||| Sbjct 186 AGG 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337184865343124