Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 123 2e-23
>seq197427
Length=19924
Score = 123 bits (136), Expect = 2e-23
Identities = 413/632 (65%), Gaps = 22/632 (3%)
Strand=Plus/Plus
Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604
|| || |||||||| || ||||| ||||||||||| |||| ||||| || || ||
Sbjct 13958 AAGCAGGCAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTC 14017
Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664
|| || ||||| || || | |||||| ||||| || || ||| || ||| || |||
Sbjct 14018 AACCCAGGCATCAACCCGCGCTTTTTGAGCCAGAAGATCGCGCAGAAGCTCCCGGAGAAG 14077
Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724
|| || ||||| ||| ||||| || || | ||| |||| || || || |
Sbjct 14078 AAAATCCCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGA-CTCGC--CACCG 14134
Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784
| ||||| || | ||||| || || || || | ||||| || || || | || |||
Sbjct 14135 TCGATCCACTTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCG 14194
Query 4785 T--TAAATAATTTACTTTT--TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840
| ||| | ||| | || ||| |||| || || | || | | |||||
Sbjct 14195 TGGAAAAGCCGGTCCTTCTCGTTAGAAT---CCTTG-ATGTACGACTCGAGCAAGAGGCT 14250
Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900
|||||||| || || || || || || || || || || ||||||||| ||| || ||
Sbjct 14251 GTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTC 14310
Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960
| ||| || || || || || || | | | ||| || || |||||||||
Sbjct 14311 AGCTACCTGGACCTCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGA 14370
Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTC-AGGCTTAAGTTTT- 5018
||| || || || || | || || | || |||| | ||||| | | | | |||
Sbjct 14371 GGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTC 14430
Query 5019 -TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077
| ||||||| | | || | | ||| ||||||||| | ||||| || || |||||
Sbjct 14431 CTCCCAGTGGCGGAGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTC 14490
Query 5078 CGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATG-ACAA---ATC 5133
||||| |||||||| ||| || | || |||| || |||| ||| | || |||
Sbjct 14491 TGCTTTCTTGTACATTTCCCAGATTTGTGGGTACTTGATTGGAAACATGCAGAAGCGATC 14550
Query 5134 TGTTGTCGTTAGGTGTAAGAAGCGGTTCTTGA 5165
|| ||| || || || || |||||||||
Sbjct 14551 TG----GGTTTGGCGTCAGGAGGGGTTCTTGA 14578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426007610052599
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |