Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq197427 123 2e-23 >seq197427 Length=19924 Score = 123 bits (136), Expect = 2e-23 Identities = 413/632 (65%), Gaps = 22/632 (3%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || || |||||||| || ||||| ||||||||||| |||| ||||| || || || Sbjct 13958 AAGCAGGCAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTC 14017 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 || || ||||| || || | |||||| ||||| || || ||| || ||| || ||| Sbjct 14018 AACCCAGGCATCAACCCGCGCTTTTTGAGCCAGAAGATCGCGCAGAAGCTCCCGGAGAAG 14077 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || || ||||| ||| ||||| || || | ||| |||| || || || | Sbjct 14078 AAAATCCCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGA-CTCGC--CACCG 14134 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | ||||| || | ||||| || || || || | ||||| || || || | || ||| Sbjct 14135 TCGATCCACTTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCG 14194 Query 4785 T--TAAATAATTTACTTTT--TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 | ||| | ||| | || ||| |||| || || | || | | ||||| Sbjct 14195 TGGAAAAGCCGGTCCTTCTCGTTAGAAT---CCTTG-ATGTACGACTCGAGCAAGAGGCT 14250 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 |||||||| || || || || || || || || || || ||||||||| ||| || || Sbjct 14251 GTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTC 14310 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 | ||| || || || || || || | | | ||| || || ||||||||| Sbjct 14311 AGCTACCTGGACCTCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGA 14370 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTC-AGGCTTAAGTTTT- 5018 ||| || || || || | || || | || |||| | ||||| | | | | ||| Sbjct 14371 GGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTC 14430 Query 5019 -TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077 | ||||||| | | || | | ||| ||||||||| | ||||| || || ||||| Sbjct 14431 CTCCCAGTGGCGGAGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTC 14490 Query 5078 CGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATG-ACAA---ATC 5133 ||||| |||||||| ||| || | || |||| || |||| ||| | || ||| Sbjct 14491 TGCTTTCTTGTACATTTCCCAGATTTGTGGGTACTTGATTGGAAACATGCAGAAGCGATC 14550 Query 5134 TGTTGTCGTTAGGTGTAAGAAGCGGTTCTTGA 5165 || ||| || || || || ||||||||| Sbjct 14551 TG----GGTTTGGCGTCAGGAGGGGTTCTTGA 14578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426007610052599