Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 114 2e-20
seq181835 114 2e-20
seq180626 114 2e-20
>seq197427
Length=19924
Score = 114 bits (126), Expect = 2e-20
Identities = 379/584 (65%), Gaps = 9/584 (2%)
Strand=Plus/Plus
Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197
|| || |||||||| || || | ||||| ||||| || || ||||| || || ||
Sbjct 13958 AAGCAGGCAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTC 14017
Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA-AA 48256
| || ||||| | || || ||||||||||| || || || || ||| ||| | | ||
Sbjct 14018 AACCCAGGCATCAACCCGCGCTTTTTGAGCCAGAAGATCGC-GCAGAAGCTCCCGGAGAA 14076
Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTGGCTTCGTTG 48314
||| || ||||| ||| ||||| || | || ||| || || || || | |
Sbjct 14077 GAAAATCCCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCACC--G 14134
Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374
| |||||| | ||||| | |||||||| | || ||||| || || || || ||
Sbjct 14135 TCGATCCACTTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCG 14194
Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434
| || || || || || || ||| || | ||| | || | || || || |||
Sbjct 14195 TGGAAAAGCCGGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTAC 14254
Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494
||||||||||| || || || || || || || || |||||||| ||| || || |
Sbjct 14255 ATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCT 14314
Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554
| ||| |||||| | || | | |||| ||||| || || || ||| ||
Sbjct 14315 ACCTGGACCTCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCG 14374
Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG---TTTATTC 48611
|| || || || | || || | || || | | |||| | ||||| || | |
Sbjct 14375 GCGAAGAAGGCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCC 14434
Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671
|||| || || || | ||| ||||||||||| ||||| || || || ||||||
Sbjct 14435 CAGTGGCGGAGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCT 14494
Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715
|| || ||||| | ||| || | ||| | |||||| || ||
Sbjct 14495 TTCTTGTACATTTCCCAGATTTGTGGGTACTTGATTGGAAACAT 14538
>seq181835
Length=5898
Score = 114 bits (126), Expect = 2e-20
Identities = 130/172 (76%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
|| |||||||||||| | || || |||||| || || |||||| |||| | || ||
Sbjct 4035 CTGTCTTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCC 3976
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015
|| |||||||| || | ||| ||||| || | || | |||| ||||| ||||||||
Sbjct 3975 TGGAGCCTCATTTGGACAAAACAAAGACCATTCCCTAT-TACCTTCAACTCTTTTCATAA 3917
Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067
| |||||||||||||| |||||| ||||||||| | || | ||| |||||
Sbjct 3916 AAAGATCAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865
Score = 87.8 bits (96), Expect = 2e-12
Identities = 153/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
||| || || || | ||| | ||| |||| |||| |||| | | ||| |||| ||||||
Sbjct 3466 ACCCCCTTGGTCAACATAGCGGGCAGTGTCATTAAAAACACGTAGCATGGGAACAATACC 3407
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
|| ||||| |||||||||||| ||||| || || | || || |||||| || ||
Sbjct 3406 ATTGGATGTCCCATTTGTTCCACGGATATAGCTGCCTGTAGCACGTATATTATGAACAGA 3347
Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337
| || |||||||| || ||| ||| || || ||||| || || || ||
Sbjct 3346 GACACCAATTCCTCCCGCTGACTTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATAT 3287
Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380
|| || ||||| ||||| ||||| | | ||| ||||||
Sbjct 3286 TCCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 3244
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204
||||| ||| |||| ||||| |||||||||||| | ||||||||||||| | |||
Sbjct 5738 ACTCTGCGACTGTAGATATTGGAGGTATATGGTTCGAAGCATTCATTGTTTCCAAGAATC 5679
Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264
||| || |||||||| ||||||||||| || | | |||||||| |||| | ||
Sbjct 5678 TGACTGGTTGAAGCAGTGGGCATAGGTGCTACAAGAAGTGAATTTCTGACTCCAT-TCTT 5620
Query 77265 CTGATTT--TATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAA 77322
|||| | || | ||| ||||||||||| || ||| ||| || |||| |
Sbjct 5619 -TGATATAATACCACGCAGAGCATTCCAATCCCATCGACTTGATGGTGTTACCCCCCACA 5561
Query 77323 GATCGTATTGTAGAATTCC 77341
||| ||| ||||||||
Sbjct 5560 TATCAGGTTGAAGAATTCC 5542
>seq180626
Length=5659
Score = 114 bits (126), Expect = 2e-20
Identities = 159/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
||| || ||||| | ||| | ||| |||| |||| |||||| | |||||||| | |||
Sbjct 2942 ACCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTAGCATTGGAACCACACC 2883
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
|| ||||| |||||||||||| |||||||| || | || ||||||||| || ||
Sbjct 2882 ATTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCACGAATATTATGAACAGA 2823
Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337
| || |||||||| || ||| || | ||| || ||||| ||||| |||||
Sbjct 2822 GACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGAT 2763
Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380
|| || || |||||||| ||||| | | ||| ||||||
Sbjct 2762 TCCTTCAATGCTGTCATCTTTCATGCACACCAAAAAGCAGCTA 2720
Score = 96.9 bits (106), Expect = 5e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
|| ||||||||||||||| || || |||||||| | |||||| |||| |||| ||
Sbjct 3409 CTGTCTTTCATATTGAGTGTACAGGTCCTCAAATTCTTGACCCCAACAATCAGCCAAACC 3350
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016
|| ||||| ||||| | ||| ||||| | ||| || |||| | ||||||
Sbjct 3349 TGGAGCCTCATTGGGGCAAAACAAAGACCATTGCTCATTACTCTGGACTCTCTGCATAAA 3290
Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067
|||||||||| ||| |||||| ||||||||| || | || || |||||
Sbjct 3289 CAGATCAGGTACCCAGAGAGCATAAAATAGATCCCGTGCTCGGTGCTCTTC 3239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692930365277920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |