Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq197427 114 2e-20 seq181835 114 2e-20 seq180626 114 2e-20 >seq197427 Length=19924 Score = 114 bits (126), Expect = 2e-20 Identities = 379/584 (65%), Gaps = 9/584 (2%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || |||||||| || || | ||||| ||||| || || ||||| || || || Sbjct 13958 AAGCAGGCAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTC 14017 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA-AA 48256 | || ||||| | || || ||||||||||| || || || || ||| ||| | | || Sbjct 14018 AACCCAGGCATCAACCCGCGCTTTTTGAGCCAGAAGATCGC-GCAGAAGCTCCCGGAGAA 14076 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTGGCTTCGTTG 48314 ||| || ||||| ||| ||||| || | || ||| || || || || | | Sbjct 14077 GAAAATCCCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCACC--G 14134 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 | |||||| | ||||| | |||||||| | || ||||| || || || || || Sbjct 14135 TCGATCCACTTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCG 14194 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 | || || || || || || ||| || | ||| | || | || || || ||| Sbjct 14195 TGGAAAAGCCGGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTAC 14254 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 ||||||||||| || || || || || || || || |||||||| ||| || || | Sbjct 14255 ATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCT 14314 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | ||| |||||| | || | | |||| ||||| || || || ||| || Sbjct 14315 ACCTGGACCTCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCG 14374 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG---TTTATTC 48611 || || || || | || || | || || | | |||| | ||||| || | | Sbjct 14375 GCGAAGAAGGCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCC 14434 Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 |||| || || || | ||| ||||||||||| ||||| || || || |||||| Sbjct 14435 CAGTGGCGGAGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCT 14494 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 || || ||||| | ||| || | ||| | |||||| || || Sbjct 14495 TTCTTGTACATTTCCCAGATTTGTGGGTACTTGATTGGAAACAT 14538 >seq181835 Length=5898 Score = 114 bits (126), Expect = 2e-20 Identities = 130/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || |||||||||||| | || || |||||| || || |||||| |||| | || || Sbjct 4035 CTGTCTTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCC 3976 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || |||||||| || | ||| ||||| || | || | |||| ||||| |||||||| Sbjct 3975 TGGAGCCTCATTTGGACAAAACAAAGACCATTCCCTAT-TACCTTCAACTCTTTTCATAA 3917 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | |||||||||||||| |||||| ||||||||| | || | ||| ||||| Sbjct 3916 AAAGATCAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || || || | ||| | ||| |||| |||| |||| | | ||| |||| |||||| Sbjct 3466 ACCCCCTTGGTCAACATAGCGGGCAGTGTCATTAAAAACACGTAGCATGGGAACAATACC 3407 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| ||||| || || | || || |||||| || || Sbjct 3406 ATTGGATGTCCCATTTGTTCCACGGATATAGCTGCCTGTAGCACGTATATTATGAACAGA 3347 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || ||| ||| || || ||||| || || || || Sbjct 3346 GACACCAATTCCTCCCGCTGACTTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATAT 3287 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || ||||| ||||| ||||| | | ||| |||||| Sbjct 3286 TCCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 3244 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204 ||||| ||| |||| ||||| |||||||||||| | ||||||||||||| | ||| Sbjct 5738 ACTCTGCGACTGTAGATATTGGAGGTATATGGTTCGAAGCATTCATTGTTTCCAAGAATC 5679 Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264 ||| || |||||||| ||||||||||| || | | |||||||| |||| | || Sbjct 5678 TGACTGGTTGAAGCAGTGGGCATAGGTGCTACAAGAAGTGAATTTCTGACTCCAT-TCTT 5620 Query 77265 CTGATTT--TATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAA 77322 |||| | || | ||| ||||||||||| || ||| ||| || |||| | Sbjct 5619 -TGATATAATACCACGCAGAGCATTCCAATCCCATCGACTTGATGGTGTTACCCCCCACA 5561 Query 77323 GATCGTATTGTAGAATTCC 77341 ||| ||| |||||||| Sbjct 5560 TATCAGGTTGAAGAATTCC 5542 >seq180626 Length=5659 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | ||| |||| |||| |||||| | |||||||| | ||| Sbjct 2942 ACCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTAGCATTGGAACCACACC 2883 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| |||||||| || | || ||||||||| || || Sbjct 2882 ATTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCACGAATATTATGAACAGA 2823 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || ||| || | ||| || ||||| ||||| ||||| Sbjct 2822 GACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGAT 2763 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || |||||||| ||||| | | ||| |||||| Sbjct 2762 TCCTTCAATGCTGTCATCTTTCATGCACACCAAAAAGCAGCTA 2720 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||||||||||||||| || || |||||||| | |||||| |||| |||| || Sbjct 3409 CTGTCTTTCATATTGAGTGTACAGGTCCTCAAATTCTTGACCCCAACAATCAGCCAAACC 3350 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || ||||| ||||| | ||| ||||| | ||| || |||| | |||||| Sbjct 3349 TGGAGCCTCATTGGGGCAAAACAAAGACCATTGCTCATTACTCTGGACTCTCTGCATAAA 3290 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||||| ||| |||||| ||||||||| || | || || ||||| Sbjct 3289 CAGATCAGGTACCCAGAGAGCATAAAATAGATCCCGTGCTCGGTGCTCTTC 3239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692930365277920