Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 123 4e-23
seq180626 118 2e-21
seq181835 105 1e-17
>seq197427
Length=19924
Score = 123 bits (136), Expect = 4e-23
Identities = 381/584 (65%), Gaps = 9/584 (2%)
Strand=Plus/Plus
Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686
|| || |||||||| || || | |||||| ||||| || || ||||| || || ||
Sbjct 13958 AAGCAGGCAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTC 14017
Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAA 46745
| ||||||||| | || |||||||||||||| || || | ||| ||| | || || ||
Sbjct 14018 AACCCAGGCATCAACCCGCGCTTTTTGAGCCAGAAGATCG-CGCAGAAGCTCCCGGAGAA 14076
Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTA 46803
||| || ||||| || || || || || | || ||| || | ||| || ||
Sbjct 14077 GAAAATCCCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGC--CACCG 14134
Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863
| |||||| | | ||||| | ||||| || | || ||||| || || || || ||
Sbjct 14135 TCGATCCACTTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCG 14194
Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923
| || || || || || | | ||| || | || | || | || || || |||
Sbjct 14195 TGGAAAAGCCGGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTAC 14254
Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983
||||| || || ||||| || || || || || || |||||||| ||| || ||||
Sbjct 14255 ATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCT 14314
Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCA 47043
| ||| ||||| | || | | | || ||||| || || || ||| ||
Sbjct 14315 ACCTGGACCTCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCG 14374
Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG---TTTATTC 47100
|| || || || | || || | || || | | || ||| ||||| || | |
Sbjct 14375 GCGAAGAAGGCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCC 14434
Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160
|||| || || || | ||| ||||||||||| |||||||| || || ||||||
Sbjct 14435 CAGTGGCGGAGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCT 14494
Query 47161 TTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204
|| || ||||| | ||| || | | || | ||| ||||| ||
Sbjct 14495 TTCTTGTACATTTCCCAGATTTGTGGGTACTTGATTGGAAACAT 14538
>seq180626
Length=5659
Score = 118 bits (130), Expect = 2e-21
Identities = 160/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812
||| || ||||| | ||| | |||||||| |||| |||||| | |||||||| | ||
Sbjct 2942 ACCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTAGCATTGGAACCACACC 2883
Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872
|| ||||| |||||||||||| |||||||| || |||||||||||| || |||
Sbjct 2882 ATTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCACGAATATTATGAACAGA 2823
Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932
| || |||||||| || || ||| | |||||| ||||| || ||||||||
Sbjct 2822 GACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGAT 2763
Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975
|| || || || ||||| ||||| | | ||| ||||||
Sbjct 2762 TCCTTCAATGCTGTCATCTTTCATGCACACCAAAAAGCAGCTA 2720
Score = 84.2 bits (92), Expect = 3e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551
|| |||||||||||| || || | |||||||| | |||||| |||| |||||||
Sbjct 3409 CTGTCTTTCATATTGAGTGTACAGGTCCTCAAATTCTTGACCCCAACAATCAGCCAAACC 3350
Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611
||| ||||| || || | ||| ||||| | ||| || || | | ||||||
Sbjct 3349 TGGAGCCTCATTGGGGCAAAACAAAGACCATTGCTCATTACTCTGGACTCTCTGCATAAA 3290
Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647
|||||||||| ||| |||||| ||||||||| ||
Sbjct 3289 CAGATCAGGTACCCAGAGAGCATAAAATAGATCCCG 3254
>seq181835
Length=5898
Score = 105 bits (116), Expect = 1e-17
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812
||| || || || | ||| | |||||||| |||| |||| | | ||| |||| ||| ||
Sbjct 3466 ACCCCCTTGGTCAACATAGCGGGCAGTGTCATTAAAAACACGTAGCATGGGAACAATACC 3407
Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872
|| ||||| |||||||||||| ||||| || || ||||| |||||| || |||
Sbjct 3406 ATTGGATGTCCCATTTGTTCCACGGATATAGCTGCCTGTAGCACGTATATTATGAACAGA 3347
Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932
| || |||||||| || || |||| ||||| ||||| || ||||| ||
Sbjct 3346 GACACCAATTCCTCCCGCTGACTTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATAT 3287
Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975
|| || ||||||||||| ||||| | | ||| ||||||
Sbjct 3286 TCCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 3244
Score = 105 bits (116), Expect = 1e-17
Identities = 128/172 (74%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551
|| |||||||||||| | || | |||||| || || |||||| |||| | || ||
Sbjct 4035 CTGTCTTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCC 3976
Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610
||| ||||| ||||| | ||| ||||| || | || | |||| ||| | ||||||||
Sbjct 3975 TGGAGCCTCATTTGGACAAAACAAAGACCATTCCCTAT-TACCTTCAACTCTTTTCATAA 3917
Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662
| |||||||||||||| |||||| ||||||||| | || | | | |||||
Sbjct 3916 AAAGATCAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865
Score = 96.9 bits (106), Expect = 5e-15
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 75740 ACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 75799
||||| ||| |||| ||||| |||||||||||| | ||||||||||||| | |||
Sbjct 5738 ACTCTGCGACTGTAGATATTGGAGGTATATGGTTCGAAGCATTCATTGTTTCCAAGAATC 5679
Query 75800 TGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 75859
||| ||||||||||| ||||||||||| || | | |||||||| |||| | ||
Sbjct 5678 TGACTGGTTGAAGCAGTGGGCATAGGTGCTACAAGAAGTGAATTTCTGACTCCAT-TCTT 5620
Query 75860 CTGATTT--TATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGA 75917
|||| | || | ||| ||||||||||| || ||||||| || |||| |
Sbjct 5619 -TGATATAATACCACGCAGAGCATTCCAATCCCATCGACTTGATGGTGTTACCCCCCACA 5561
Query 75918 GATCGTATTGTAGAATTCC 75936
||| ||| ||||||||
Sbjct 5560 TATCAGGTTGAAGAATTCC 5542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 711150254928960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |