Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq197427 123 4e-23 seq180626 118 2e-21 seq181835 105 1e-17 >seq197427 Length=19924 Score = 123 bits (136), Expect = 4e-23 Identities = 381/584 (65%), Gaps = 9/584 (2%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || || |||||||| || || | |||||| ||||| || || ||||| || || || Sbjct 13958 AAGCAGGCAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTC 14017 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAA 46745 | ||||||||| | || |||||||||||||| || || | ||| ||| | || || || Sbjct 14018 AACCCAGGCATCAACCCGCGCTTTTTGAGCCAGAAGATCG-CGCAGAAGCTCCCGGAGAA 14076 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTA 46803 ||| || ||||| || || || || || | || ||| || | ||| || || Sbjct 14077 GAAAATCCCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGC--CACCG 14134 Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 | |||||| | | ||||| | ||||| || | || ||||| || || || || || Sbjct 14135 TCGATCCACTTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCG 14194 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 | || || || || || | | ||| || | || | || | || || || ||| Sbjct 14195 TGGAAAAGCCGGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTAC 14254 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 ||||| || || ||||| || || || || || || |||||||| ||| || |||| Sbjct 14255 ATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCT 14314 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCA 47043 | ||| ||||| | || | | | || ||||| || || || ||| || Sbjct 14315 ACCTGGACCTCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCG 14374 Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG---TTTATTC 47100 || || || || | || || | || || | | || ||| ||||| || | | Sbjct 14375 GCGAAGAAGGCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCC 14434 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 |||| || || || | ||| ||||||||||| |||||||| || || |||||| Sbjct 14435 CAGTGGCGGAGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCT 14494 Query 47161 TTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 || || ||||| | ||| || | | || | ||| ||||| || Sbjct 14495 TTCTTGTACATTTCCCAGATTTGTGGGTACTTGATTGGAAACAT 14538 >seq180626 Length=5659 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||| | |||||||| |||| |||||| | |||||||| | || Sbjct 2942 ACCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTAGCATTGGAACCACACC 2883 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| |||||||| || |||||||||||| || ||| Sbjct 2882 ATTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCACGAATATTATGAACAGA 2823 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || || ||| | |||||| ||||| || |||||||| Sbjct 2822 GACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGAT 2763 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || || ||||| ||||| | | ||| |||||| Sbjct 2762 TCCTTCAATGCTGTCATCTTTCATGCACACCAAAAAGCAGCTA 2720 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 || |||||||||||| || || | |||||||| | |||||| |||| ||||||| Sbjct 3409 CTGTCTTTCATATTGAGTGTACAGGTCCTCAAATTCTTGACCCCAACAATCAGCCAAACC 3350 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||||| || || | ||| ||||| | ||| || || | | |||||| Sbjct 3349 TGGAGCCTCATTGGGGCAAAACAAAGACCATTGCTCATTACTCTGGACTCTCTGCATAAA 3290 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||||| ||| |||||| ||||||||| || Sbjct 3289 CAGATCAGGTACCCAGAGAGCATAAAATAGATCCCG 3254 >seq181835 Length=5898 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || || || | ||| | |||||||| |||| |||| | | ||| |||| ||| || Sbjct 3466 ACCCCCTTGGTCAACATAGCGGGCAGTGTCATTAAAAACACGTAGCATGGGAACAATACC 3407 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| ||||| || || ||||| |||||| || ||| Sbjct 3406 ATTGGATGTCCCATTTGTTCCACGGATATAGCTGCCTGTAGCACGTATATTATGAACAGA 3347 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || || |||| ||||| ||||| || ||||| || Sbjct 3346 GACACCAATTCCTCCCGCTGACTTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATAT 3287 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || ||||||||||| ||||| | | ||| |||||| Sbjct 3286 TCCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 3244 Score = 105 bits (116), Expect = 1e-17 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 || |||||||||||| | || | |||||| || || |||||| |||| | || || Sbjct 4035 CTGTCTTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCC 3976 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 ||| ||||| ||||| | ||| ||||| || | || | |||| ||| | |||||||| Sbjct 3975 TGGAGCCTCATTTGGACAAAACAAAGACCATTCCCTAT-TACCTTCAACTCTTTTCATAA 3917 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 | |||||||||||||| |||||| ||||||||| | || | | | ||||| Sbjct 3916 AAAGATCAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 75740 ACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 75799 ||||| ||| |||| ||||| |||||||||||| | ||||||||||||| | ||| Sbjct 5738 ACTCTGCGACTGTAGATATTGGAGGTATATGGTTCGAAGCATTCATTGTTTCCAAGAATC 5679 Query 75800 TGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 75859 ||| ||||||||||| ||||||||||| || | | |||||||| |||| | || Sbjct 5678 TGACTGGTTGAAGCAGTGGGCATAGGTGCTACAAGAAGTGAATTTCTGACTCCAT-TCTT 5620 Query 75860 CTGATTT--TATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGA 75917 |||| | || | ||| ||||||||||| || ||||||| || |||| | Sbjct 5619 -TGATATAATACCACGCAGAGCATTCCAATCCCATCGACTTGATGGTGTTACCCCCCACA 5561 Query 75918 GATCGTATTGTAGAATTCC 75936 ||| ||| |||||||| Sbjct 5560 TATCAGGTTGAAGAATTCC 5542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711150254928960