Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq198569 266 4e-66 seq198106 176 6e-39 seq197886 161 1e-34 seq199332 152 6e-32 seq197706 138 1e-27 seq200167 127 3e-24 seq198484 125 9e-24 seq198248 109 7e-19 seq197639 105 8e-18 seq198608 87.8 2e-12 seq198491 87.8 2e-12 >seq198569 Length=8129 Score = 266 bits (294), Expect = 4e-66 Identities = 346/477 (73%), Gaps = 16/477 (3%) Strand=Plus/Plus Query 183499 CACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTC 183558 |||||| | |||| || || || |||||||||||||||||| | || |||| | Sbjct 2756 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTG 2815 Query 183559 GGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTC 183618 |||||||| |||||||| |||||| ||| || |||||||| ||||| || ||||| Sbjct 2816 GGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2875 Query 183619 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGT 183678 ||| || ||||||| | |||||||| |||| |||||| ||||| || || ||| | Sbjct 2876 TTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCT 2935 Query 183679 GGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC-CTT 183737 || || || |||| ||| | || ||||| || |||||||| ||||| |||||||| || Sbjct 2936 GGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCACCCATTT 2995 Query 183738 CCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTC 183797 | | ||| | ||||| |||||||| || | || ||||| |||| ||| ||||| ||||| Sbjct 2996 CGATATGTTAGGTGTAGCTGGTGTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC 3055 Query 183798 TCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTA 183857 |||| ||| || | | |||||||| | || || | || || Sbjct 3056 CTTGGTAGCTT-----CTAATCAGGGAAACCACCCCG-CT---------AATGAAGGGTA 3100 Query 183858 CAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCG 183917 || || |||||||| || || || || || ||||| ||||||||||| || ||||| || Sbjct 3101 CAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCG 3160 Query 183918 TCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGC 183974 |||||||||| |||||| || ||||| ||||||||| | || || ||||| || Sbjct 3161 ATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq198106 Length=2703 Score = 176 bits (194), Expect = 6e-39 Identities = 653/1013 (64%), Gaps = 28/1013 (3%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | | ||| | ||||| |||| |||| |||| | ||| | || | Sbjct 377 TGGATGACTGGTTACGAAGGGACAGTTTTGTTTTTGGAGGCTAGTCTAGTTTATTGCTCT 436 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | | | ||||| ||| ||| || | || ||||| || | Sbjct 437 TTCCTTGTGCCTATTTCACTTTCGGTGGTTGGTTTATAGGTATGACCTTTGTAACCTCAT 496 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149 ||||||| || || ||||| |||| | | || || ||| ||||| | || | Sbjct 497 GGTATACTCATGGATTGGCCAGTTCTAATTTGGAAGGCTGC-AATTTATTAACAACCTTT 555 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || ||| | || | | | | |||||| | | ||||||| | || Sbjct 556 GTTTCTACTTCAACTAATAGTTTAGCCCATTCTTTGTTGTTACTTTGAAGC----AG--- 608 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 |||||||| | | | |||| ||| | || || | |||| |||||| || || || Sbjct 609 -AAGGAGATTTTACTTGTTGGTGTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCAT 667 Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTC-GTCTCGT-AG 186327 || || ||||| || |||||||||||| | | || || ||| | || ||| | | Sbjct 668 GGCGCTTTTGCACTAATAGGTTTCATGGTATGTCAATTCGAACTTGCTCAATCTGTTCAA 727 Query 186328 GTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTAT 186387 ||| | || || ||||| ||||| || || | || || | ||| || ||| ||||| Sbjct 728 TTAT--GACCTTATAATGCAATTGCATTCTCAAGACCAATTGTTGTTTTCGTTTTTGTAT 785 Query 186388 TCCTCATCTACCCTCTTGGACAGTCCTCATGG-TTCTTCGCTCCCTCCTTTGGAGTCGCA 186446 |||| || || || || || ||| ||| || || | | | |||||| || || Sbjct 786 TCCTGATTTATCCACTCGGTTAGTTTGGTTGGTTTTTTTGAGCTCAGCTTTGGTGTATCA 845 Query 186447 GCAATCTTTAGATTCCT-GTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATT 186505 || || ||| ||||| | || || | |||| || || || ||||| ||||| | | | Sbjct 846 GCTATATTTTGATTCATCCTTTTTTTTTCAAGAGTTTCATAATTGGACATTGAACCTAGT 905 Query 186506 CCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCT---GTCAGCA--ATCCAT 186560 || ||||| | || | | | | | | || ||| |||| | ||| || ||| Sbjct 906 TCATATGATTAGAGTTGTTGATGTATTGGCTGCGGCTTTGCTATGCTATGCAATATTCAT 965 Query 186561 GGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCA 186620 || | ||| ||||||||| | | ||||||||| || ||||| |||||| || Sbjct 966 GGCACTGTTGTGGAAAATACTTTATCTGAAGATGGAGATGGTGCAAATACATTCTGGGCT 1025 Query 186621 TTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCA 186680 || | || || |||| ||||||| ||||| |||||||||| | | | || ||| | Sbjct 1026 TTTAACACAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGTCAGCTGCTTTTGGCCC 1085 Query 186681 CAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTT 186740 || || || || |||| ||| |||||| |||| | |||||||| ||| | ||| Sbjct 1086 CAAATTTTTGGGGTTGCTTTTTCCAATAAATGTTGTTTACATTTCTTTATGTTATTTAAA 1145 Query 186741 CCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGT 186800 | || | | | |||| | | |||| | ||||| || | ||||| ||| Sbjct 1146 CTAGTAACCGATGCATGGATGAGTGCTCTTGGAGCAGTCGGTCTGGCCGTGAACCTGCGT 1205 Query 186801 GCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTC 186860 || |||||||| | | || | | | | ||| ||||| | || ||||| Sbjct 1206 GCCTATGACTTCATTTCTTTAGAAATTCGCGTACTAGAAAATCCTAAATTTGAGAC---- 1261 Query 186861 TATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAA 186920 |||| | || || || ||||| ||| | ||||| |||||||| | ||||| Sbjct 1262 ---ACCATAAGCATTCTCTTAAATGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 1318 Query 186921 CCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || ||||||||| || |||| ||||| || || | || | || |||||||| Sbjct 1319 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 1371 >seq197886 Length=1258 Score = 161 bits (178), Expect = 1e-34 Identities = 202/277 (73%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 183911 TTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCC 183970 |||| || |||||||||| |||| | | ||||| ||||||| || | | || ||||||| Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391 Query 183971 TTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCAT 184030 | ||| |||||| || | || |||| ||| | || | | ||| ||||| | |||| Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451 Query 184031 TTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGA 184090 | ||||| |||||||| || |||||||| ||| | ||||| |||||||||||| | | Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTA 511 Query 184091 ACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGT-----GATGCACGA 184145 | || ||||| || | | |||| |||| |||| | | |||| || || || Sbjct 512 AGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGA 571 Query 184146 GCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 ||||||||||| ||||||||||| ||||| | |||| Sbjct 572 ACGTAATGCTCATAACTTCCCTCTAGACCTAGTTGCT 608 >seq199332 Length=2940 Score = 152 bits (168), Expect = 6e-32 Identities = 314/460 (68%), Gaps = 9/460 (2%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || ||||| || ||||| || || | || | Sbjct 2527 TGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 2468 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 || | ||| ||| | || | || || ||| |||| || ||||| ||||| || | Sbjct 2467 TTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 2408 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149 ||||||| ||||| |||||| ||| || | ||||| ||| || || | || || ||| Sbjct 2407 GGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTTCTTAACCGCGGCA 2349 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || ||||||||| | | | | | ||| | | |||| |||||||| || | Sbjct 2348 GTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGTCCAGAAGCA 2289 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 ||||| ||| | | || |||| ||| | || || || |||| ||||| || |||||| Sbjct 2288 CAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTTGCTCTCCAC 2229 Query 186270 GGAGCCTTTGCTCTCATA----GGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCG 186324 || || |||| || ||| |||||||| | || |||||| | ||| ||| | Sbjct 2228 GGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAACTTGCTCGATCT-G 2171 Query 186325 TAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTG 186384 | | || || || ||||| || || || |||| ||| || || || |||||| || Sbjct 2170 TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTTGTTTCTG 2111 Query 186385 TATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTT 186424 ||||||| || || || || || ||||| |||||||| Sbjct 2110 TATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTT 2071 >seq197706 Length=393 Score = 138 bits (152), Expect = 1e-27 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 183298 GCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCG 183357 |||||| | ||||||||||| || || || || || || || ||||| ||| ||||||| Sbjct 153 GCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCT 212 Query 183358 CTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGA 183417 || | ||||| ||||| || ||||| ||||| || ||||| |||| || || || Sbjct 213 CTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGC 272 Query 183418 CTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGT 183477 | ||||| || || || |||||||| ||||| | ||||| ||| | || || || ||| Sbjct 273 TTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGT 332 Query 183478 CCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAG 183537 ||||| | || | || | |||||| | |||| || || || |||||||||||| Sbjct 333 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 392 Query 183538 T 183538 | Sbjct 393 T 393 >seq200167 Length=15642 Score = 127 bits (140), Expect = 3e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 183657 TGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCA 183716 ||||||||| || || ||| ||| || || |||| ||| || ||||| || ||||| Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 183717 CAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCT 183776 ||||||||| |||||||| || |||||| | ||||| |||||||| || ||||| || || Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 183777 GTTCAGTGCAATGCACGGTTCTCTG 183801 ||||||| | ||||| |||||| || Sbjct 10706 GTTCAGTACTATGCATGGTTCTTTG 10682 >seq198484 Length=6561 Score = 125 bits (138), Expect = 9e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 184039 AATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGG 184098 |||||||| || |||||||| || | ||||| ||||||| ||||| | || |||||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 184099 GCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCAC 184158 || || | | ||||||||| ||||| |||||||| ||||| || ||||||||||| Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 184159 AACTTCCCTCTCGACCTTGCTGCT 184182 ||||||||||| ||||| || ||| Sbjct 6354 AACTTCCCTCTAGACCTAGCGGCT 6377 >seq198248 Length=3867 Score = 109 bits (120), Expect = 7e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 183964 TTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACT 184023 || ||||| ||||||||||| || || || |||||||| |||||| | ||| | |||||| Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 184024 ATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 184083 ||||| || || || |||||||| || |||||||| || | ||||| |||||||| || Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGT 272 >seq197639 Length=228 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 184067 TTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTG 184126 ||||| ||||||| ||||| | || |||||||| || | | ||||||||| |||| Sbjct 221 TTGATAGTCAAGGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTG 162 Query 184127 GCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 | |||||||| ||||| || ||||||||||| ||||||||||| ||||| || ||| Sbjct 161 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCT 106 >seq198608 Length=9413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 186717 CTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATT 186776 ||||||||||| ||| | ||||| || || | ||| | |||| | | |||| | Sbjct 2987 CTTCATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTA 2928 Query 186777 ATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCA 186836 | ||||| || || ||||| ||||| |||||||| || |||||| | | ||||| Sbjct 2927 GTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCG 2868 Query 186837 GAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGA 186886 || |||||||| || ||||| ||||| ||||| || || || || || || Sbjct 2867 GAAGATCCTGAATTTGAGACTTTCTACACCAA-AACATTCTCTTAAACGA 2819 >seq198491 Length=6715 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 186434 CTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGAC 186493 |||||| || | || || ||| ||||| | | || | ||||| ||| | || ||||| Sbjct 5648 CTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTTCAAGGTTTC-ATAATTGGAC 5590 Query 186494 GTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGC 186553 |||||| ||||| || |||||||| || || ||| | | || | ||| |||| | || Sbjct 5589 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGCGCGGCTTTGCTATGCGC 5530 Query 186554 AATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGA 186598 || ||||| | || || ||||||||| | | ||||||||| || Sbjct 5529 TATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGATGGTGA 5485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620513645496360