Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_031235.1
Length=194437
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 266 4e-66
seq198106 176 6e-39
seq197886 161 1e-34
seq199332 152 6e-32
seq197706 138 1e-27
seq200167 127 3e-24
seq198484 125 9e-24
seq198248 109 7e-19
seq197639 105 8e-18
seq198608 87.8 2e-12
seq198491 87.8 2e-12
>seq198569
Length=8129
Score = 266 bits (294), Expect = 4e-66
Identities = 346/477 (73%), Gaps = 16/477 (3%)
Strand=Plus/Plus
Query 183499 CACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTC 183558
|||||| | |||| || || || |||||||||||||||||| | || |||| |
Sbjct 2756 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTG 2815
Query 183559 GGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTC 183618
|||||||| |||||||| |||||| ||| || |||||||| ||||| || |||||
Sbjct 2816 GGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2875
Query 183619 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGT 183678
||| || ||||||| | |||||||| |||| |||||| ||||| || || ||| |
Sbjct 2876 TTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCT 2935
Query 183679 GGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC-CTT 183737
|| || || |||| ||| | || ||||| || |||||||| ||||| |||||||| ||
Sbjct 2936 GGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCACCCATTT 2995
Query 183738 CCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTC 183797
| | ||| | ||||| |||||||| || | || ||||| |||| ||| ||||| |||||
Sbjct 2996 CGATATGTTAGGTGTAGCTGGTGTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC 3055
Query 183798 TCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTA 183857
|||| ||| || | | |||||||| | || || | || ||
Sbjct 3056 CTTGGTAGCTT-----CTAATCAGGGAAACCACCCCG-CT---------AATGAAGGGTA 3100
Query 183858 CAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCG 183917
|| || |||||||| || || || || || ||||| ||||||||||| || ||||| ||
Sbjct 3101 CAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCG 3160
Query 183918 TCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGC 183974
|||||||||| |||||| || ||||| ||||||||| | || || ||||| ||
Sbjct 3161 ATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217
>seq198106
Length=2703
Score = 176 bits (194), Expect = 6e-39
Identities = 653/1013 (64%), Gaps = 28/1013 (3%)
Strand=Plus/Plus
Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030
||||||||||| | | | ||| | ||||| |||| |||| |||| | ||| | || |
Sbjct 377 TGGATGACTGGTTACGAAGGGACAGTTTTGTTTTTGGAGGCTAGTCTAGTTTATTGCTCT 436
Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090
|||| ||| ||| | | | ||||| ||| ||| || | || ||||| || |
Sbjct 437 TTCCTTGTGCCTATTTCACTTTCGGTGGTTGGTTTATAGGTATGACCTTTGTAACCTCAT 496
Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149
||||||| || || ||||| |||| | | || || ||| ||||| | || |
Sbjct 497 GGTATACTCATGGATTGGCCAGTTCTAATTTGGAAGGCTGC-AATTTATTAACAACCTTT 555
Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209
|| || ||| | || | | | | |||||| | | ||||||| | ||
Sbjct 556 GTTTCTACTTCAACTAATAGTTTAGCCCATTCTTTGTTGTTACTTTGAAGC----AG--- 608
Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269
|||||||| | | | |||| ||| | || || | |||| |||||| || || ||
Sbjct 609 -AAGGAGATTTTACTTGTTGGTGTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCAT 667
Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTC-GTCTCGT-AG 186327
|| || ||||| || |||||||||||| | | || || ||| | || ||| | |
Sbjct 668 GGCGCTTTTGCACTAATAGGTTTCATGGTATGTCAATTCGAACTTGCTCAATCTGTTCAA 727
Query 186328 GTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTAT 186387
||| | || || ||||| ||||| || || | || || | ||| || ||| |||||
Sbjct 728 TTAT--GACCTTATAATGCAATTGCATTCTCAAGACCAATTGTTGTTTTCGTTTTTGTAT 785
Query 186388 TCCTCATCTACCCTCTTGGACAGTCCTCATGG-TTCTTCGCTCCCTCCTTTGGAGTCGCA 186446
|||| || || || || || ||| ||| || || | | | |||||| || ||
Sbjct 786 TCCTGATTTATCCACTCGGTTAGTTTGGTTGGTTTTTTTGAGCTCAGCTTTGGTGTATCA 845
Query 186447 GCAATCTTTAGATTCCT-GTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATT 186505
|| || ||| ||||| | || || | |||| || || || ||||| ||||| | | |
Sbjct 846 GCTATATTTTGATTCATCCTTTTTTTTTCAAGAGTTTCATAATTGGACATTGAACCTAGT 905
Query 186506 CCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCT---GTCAGCA--ATCCAT 186560
|| ||||| | || | | | | | | || ||| |||| | ||| || |||
Sbjct 906 TCATATGATTAGAGTTGTTGATGTATTGGCTGCGGCTTTGCTATGCTATGCAATATTCAT 965
Query 186561 GGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCA 186620
|| | ||| ||||||||| | | ||||||||| || ||||| |||||| ||
Sbjct 966 GGCACTGTTGTGGAAAATACTTTATCTGAAGATGGAGATGGTGCAAATACATTCTGGGCT 1025
Query 186621 TTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCA 186680
|| | || || |||| ||||||| ||||| |||||||||| | | | || ||| |
Sbjct 1026 TTTAACACAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGTCAGCTGCTTTTGGCCC 1085
Query 186681 CAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTT 186740
|| || || || |||| ||| |||||| |||| | |||||||| ||| | |||
Sbjct 1086 CAAATTTTTGGGGTTGCTTTTTCCAATAAATGTTGTTTACATTTCTTTATGTTATTTAAA 1145
Query 186741 CCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGT 186800
| || | | | |||| | | |||| | ||||| || | ||||| |||
Sbjct 1146 CTAGTAACCGATGCATGGATGAGTGCTCTTGGAGCAGTCGGTCTGGCCGTGAACCTGCGT 1205
Query 186801 GCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTC 186860
|| |||||||| | | || | | | | ||| ||||| | || |||||
Sbjct 1206 GCCTATGACTTCATTTCTTTAGAAATTCGCGTACTAGAAAATCCTAAATTTGAGAC---- 1261
Query 186861 TATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAA 186920
|||| | || || || ||||| ||| | ||||| |||||||| | |||||
Sbjct 1262 ---ACCATAAGCATTCTCTTAAATGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 1318
Query 186921 CCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973
|| ||||||||| || |||| ||||| || || | || | || ||||||||
Sbjct 1319 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 1371
>seq197886
Length=1258
Score = 161 bits (178), Expect = 1e-34
Identities = 202/277 (73%), Gaps = 5/277 (2%)
Strand=Plus/Plus
Query 183911 TTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCC 183970
|||| || |||||||||| |||| | | ||||| ||||||| || | | || |||||||
Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391
Query 183971 TTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCAT 184030
| ||| |||||| || | || |||| ||| | || | | ||| ||||| | ||||
Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451
Query 184031 TTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGA 184090
| ||||| |||||||| || |||||||| ||| | ||||| |||||||||||| | |
Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTA 511
Query 184091 ACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGT-----GATGCACGA 184145
| || ||||| || | | |||| |||| |||| | | |||| || || ||
Sbjct 512 AGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGA 571
Query 184146 GCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 184182
||||||||||| ||||||||||| ||||| | ||||
Sbjct 572 ACGTAATGCTCATAACTTCCCTCTAGACCTAGTTGCT 608
>seq199332
Length=2940
Score = 152 bits (168), Expect = 6e-32
Identities = 314/460 (68%), Gaps = 9/460 (2%)
Strand=Plus/Minus
Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030
||||||||||| | | ||||| || || ||||| || ||||| || || | || |
Sbjct 2527 TGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 2468
Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090
|| | ||| ||| | || | || || ||| |||| || ||||| ||||| || |
Sbjct 2467 TTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 2408
Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149
||||||| ||||| |||||| ||| || | ||||| ||| || || | || || |||
Sbjct 2407 GGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTTCTTAACCGCGGCA 2349
Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209
|| || ||||||||| | | | | | ||| | | |||| |||||||| || |
Sbjct 2348 GTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGTCCAGAAGCA 2289
Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269
||||| ||| | | || |||| ||| | || || || |||| ||||| || ||||||
Sbjct 2288 CAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTTGCTCTCCAC 2229
Query 186270 GGAGCCTTTGCTCTCATA----GGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCG 186324
|| || |||| || ||| |||||||| | || |||||| | ||| ||| |
Sbjct 2228 GGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAACTTGCTCGATCT-G 2171
Query 186325 TAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTG 186384
| | || || || ||||| || || || |||| ||| || || || |||||| ||
Sbjct 2170 TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTTGTTTCTG 2111
Query 186385 TATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTT 186424
||||||| || || || || || ||||| ||||||||
Sbjct 2110 TATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTT 2071
>seq197706
Length=393
Score = 138 bits (152), Expect = 1e-27
Identities = 175/241 (73%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 183298 GCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCG 183357
|||||| | ||||||||||| || || || || || || || ||||| ||| |||||||
Sbjct 153 GCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCT 212
Query 183358 CTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGA 183417
|| | ||||| ||||| || ||||| ||||| || ||||| |||| || || ||
Sbjct 213 CTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGC 272
Query 183418 CTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGT 183477
| ||||| || || || |||||||| ||||| | ||||| ||| | || || || |||
Sbjct 273 TTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGT 332
Query 183478 CCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAG 183537
||||| | || | || | |||||| | |||| || || || ||||||||||||
Sbjct 333 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 392
Query 183538 T 183538
|
Sbjct 393 T 393
>seq200167
Length=15642
Score = 127 bits (140), Expect = 3e-24
Identities = 115/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 183657 TGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCA 183716
||||||||| || || ||| ||| || || |||| ||| || ||||| || |||||
Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767
Query 183717 CAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCT 183776
||||||||| |||||||| || |||||| | ||||| |||||||| || ||||| || ||
Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707
Query 183777 GTTCAGTGCAATGCACGGTTCTCTG 183801
||||||| | ||||| |||||| ||
Sbjct 10706 GTTCAGTACTATGCATGGTTCTTTG 10682
>seq198484
Length=6561
Score = 125 bits (138), Expect = 9e-24
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 184039 AATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGG 184098
|||||||| || |||||||| || | ||||| ||||||| ||||| | || ||||||
Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293
Query 184099 GCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCAC 184158
|| || | | ||||||||| ||||| |||||||| ||||| || |||||||||||
Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353
Query 184159 AACTTCCCTCTCGACCTTGCTGCT 184182
||||||||||| ||||| || |||
Sbjct 6354 AACTTCCCTCTAGACCTAGCGGCT 6377
>seq198248
Length=3867
Score = 109 bits (120), Expect = 7e-19
Identities = 96/120 (80%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 183964 TTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACT 184023
|| ||||| ||||||||||| || || || |||||||| |||||| | ||| | ||||||
Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332
Query 184024 ATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 184083
||||| || || || |||||||| || |||||||| || | ||||| |||||||| ||
Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGT 272
>seq197639
Length=228
Score = 105 bits (116), Expect = 8e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 184067 TTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTG 184126
||||| ||||||| ||||| | || |||||||| || | | ||||||||| ||||
Sbjct 221 TTGATAGTCAAGGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTG 162
Query 184127 GCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 184182
| |||||||| ||||| || ||||||||||| ||||||||||| ||||| || |||
Sbjct 161 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCT 106
>seq198608
Length=9413
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/170 (72%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 186717 CTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATT 186776
||||||||||| ||| | ||||| || || | ||| | |||| | | |||| |
Sbjct 2987 CTTCATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTA 2928
Query 186777 ATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCA 186836
| ||||| || || ||||| ||||| |||||||| || |||||| | | |||||
Sbjct 2927 GTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCG 2868
Query 186837 GAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGA 186886
|| |||||||| || ||||| ||||| ||||| || || || || || ||
Sbjct 2867 GAAGATCCTGAATTTGAGACTTTCTACACCAA-AACATTCTCTTAAACGA 2819
>seq198491
Length=6715
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/165 (72%), Gaps = 1/165 (1%)
Strand=Plus/Minus
Query 186434 CTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGAC 186493
|||||| || | || || ||| ||||| | | || | ||||| ||| | || |||||
Sbjct 5648 CTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTTCAAGGTTTC-ATAATTGGAC 5590
Query 186494 GTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGC 186553
|||||| ||||| || |||||||| || || ||| | | || | ||| |||| | ||
Sbjct 5589 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGCGCGGCTTTGCTATGCGC 5530
Query 186554 AATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGA 186598
|| ||||| | || || ||||||||| | | ||||||||| ||
Sbjct 5529 TATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGATGGTGA 5485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620513645496360
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