Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq198569 250 3e-61 seq199332 194 2e-44 seq198282 187 3e-42 seq197706 147 3e-30 seq200167 131 2e-25 seq197886 120 4e-22 seq198484 116 4e-21 seq198621 107 2e-18 seq198248 105 8e-18 seq197639 100 3e-16 seq100777 98.7 1e-15 seq198608 87.8 2e-12 >seq198569 Length=8129 Score = 250 bits (276), Expect = 3e-61 Identities = 328/453 (72%), Gaps = 16/453 (4%) Strand=Plus/Plus Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984 || ||||||||||||||||||||| || ||| | |||||||| || ||||| ||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAA 178044 ||||| || ||||| || || || || ||||||| ||| | | ||||| | |||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 178045 GGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 178104 || ||| ||||| | ||||| || || ||| ||| || ||||||| |||| | || Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCC-CTTCCACATGTTGGGCGTCGCTGGTGT 178163 ||||| || |||||||| ||||| |||||||| ||| | ||||| || || |||||||| Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 178164 CTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCG 178223 || | || ||||| |||| ||| ||||| ||||| |||| ||| || | | Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTCCTTGGTAGCTT-----CTAATCAG 3074 Query 178224 TGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 178283 ||||||||| | | || | | || |||| || |||||||| || || || Sbjct 3075 GGAAACCACCCCG--CTAATG--------AAGGGTACAGATTTGGTCAAGAGGAGGAAAC 3124 Query 178284 CTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTT 178343 || || || || |||||||||||||| || || || ||||||||||||| || || Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184 Query 178344 CAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 178376 ||||||||| ||||| | || || ||||| || Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq199332 Length=2940 Score = 194 bits (214), Expect = 2e-44 Identities = 330/472 (70%), Gaps = 11/472 (2%) Strand=Plus/Minus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | ||||||||| | | | || || ||||||||||| |||||||| ||| Sbjct 2537 TTTGATATTATGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 2478 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || || ||| || | || | || |||||| | || || ||||| || Sbjct 2477 CTATTGCTCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTT 2418 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || || || |||||||| ||||| | || ||| ||| | ||||| || || ||| | Sbjct 2417 GTAACTTCATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGCAACTTCTTA 2358 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCC--TACTTCTT-CTATGG 179075 || || || || || ||||||||| | | | || || | | || || |||||| Sbjct 2357 ACCGCGGCAGTTTCTACTCCTGCTAATAGTTT---ACTTTACTCTTTGTTGTTACTATGG 2301 Query 179076 GGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTT 179135 ||||||||||| || || ||||| || ||| ||| | || || || ||| | ||| Sbjct 2300 GGTCCAGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTT 2241 Query 179136 GTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTC---GGCAGTTTGAAATC 179192 || || |||||||| || || | || ||||||| | | | | || |||||| | Sbjct 2240 GTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTGGTTTCATTAAAGTCAATTTGAACTT 2181 Query 179193 GCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGT 179251 || || ||| || | | || ||||| ||||||||||| || |||| ||||||||| || Sbjct 2180 GCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGT 2122 Query 179252 CTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTT 179303 ||||| ||||| || || || ||||| || || ||||| ||||||||| Sbjct 2121 TTTTGTTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTT 2070 >seq198282 Length=4172 Score = 187 bits (206), Expect = 3e-42 Identities = 217/293 (74%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 179533 TGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTT 179592 |||| || |||||||| || ||||| || |||||||| | || || |||||| |||| Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60 Query 179593 GGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTA 179652 || |||||||||||||||| ||||| || || | ||| | |||| | |||| Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120 Query 179653 TTATTGGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGG 179712 | | ||||| || || ||||| | || |||||||| ||||| || || || | || | Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180 Query 179713 CAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTAC 179772 | || |||||||| || ||||| ||||| ||||| ||||| || || ||||| ||| | | Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240 Query 179773 GTGCTTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAA 179825 ||||||||||||| | ||||| || ||||||||| || |||| ||| || Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTAAA 293 >seq197706 Length=393 Score = 147 bits (162), Expect = 3e-30 Identities = 246/352 (70%), Gaps = 9/352 (3%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||| ||||||| |||| ||| || || |||| || | || |||| ||||| || Sbjct 42 TTCCGTAACTGAATAACTAGCACTAAAAACTGTCTTTACATTGGATGGTATGGTGTTTTG 101 Query 177658 ATGATCCCTACG--CTGCTCGCTG----CTGCTA--TCTGT-TTCATCGTCGCTTTCGTC 177708 |||||||||||| | | | || |||| | ||||| || || |||| ||| | Sbjct 102 ATGATCCCTACGGACCCCACCCTATTAACTGCAACTTCTGTATTTATTATCGCCTTCATT 161 Query 177709 GCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTAT 177768 ||||||||||| || || || || || || |||||||| || |||| || || | ||| Sbjct 162 GCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTAT 221 Query 177769 GGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTC 177828 || ||||| || || || ||||| || ||||| ||||| ||||| || | ||||| Sbjct 222 GGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGCTTGCACTTT 281 Query 177829 TATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAA 177888 || || || |||||||| || || | ||||| ||| | |||||||| ||||||| | Sbjct 282 TACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAG 341 Query 177889 CTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGT 177940 || || | | |||||| | | ||| | | || ||||||||||||| Sbjct 342 CTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGT 393 >seq200167 Length=15642 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 178062 TATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAA 178121 |||||| || || ||| ||| || ||||||| ||| || ||||| || |||||||| Sbjct 10823 TATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAA 10764 Query 178122 CATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTT 178181 |||||| |||||||| || |||||||| || || |||||||| |||||||| || ||||| Sbjct 10763 CATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTT 10704 Query 178182 CAGTGCGATGCACGGTTCTCTG 178203 |||| | ||||| |||||| || Sbjct 10703 CAGTACTATGCATGGTTCTTTG 10682 >seq197886 Length=1258 Score = 120 bits (132), Expect = 4e-22 Identities = 191/274 (70%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 178322 TGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCAT 178381 ||||||||||||| | | || || || || | || | || |||||||| | | | Sbjct 341 TGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCCTAACTGTTT 400 Query 178382 GGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCA 178441 ||||||| | ||||||| ||||| || | | ||| ||||| |||| ||||||| | Sbjct 401 GGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTGTCAACCTAA 460 Query 178442 ACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGG 178501 | ||||| || |||||||| ||| | | |||| ||| || || | || || |||| Sbjct 461 ATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTAAGACTTGGG 520 Query 178502 CAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGT-----CATGCACGAGCGTAATGC 178556 | || | | |||| |||| |||||| | |||| || || || |||||||| Sbjct 521 CTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGAACGTAATGC 580 Query 178557 TCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 ||| ||||||||||| ||||| | |||| |||| Sbjct 581 TCATAACTTCCCTCTAGACCTAGTTGCTATTGAA 614 >seq198484 Length=6561 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 178441 AACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGG 178500 || |||||||| |||||||| || | | |||||||| ||| || | || |||||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 178501 GCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCAC 178560 || || | | ||||||||| |||||||||||||| ||||| || ||||||||||| Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 178561 AACTTCCCTCTTGACCTCGCTGCT 178584 ||||||||||| ||||| || ||| Sbjct 6354 AACTTCCCTCTAGACCTAGCGGCT 6377 >seq198621 Length=9897 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 179393 GGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGA 179452 ||| || || ||| | | |||| || ||||| || || |||||||| || || || || Sbjct 1 GGGAGTTGCCGGTGTATTAGGCGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGA 60 Query 179453 GAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACA 179512 || || | |||||||| |||| ||||||||||| || || | || || || Sbjct 61 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCA 120 Query 179513 AGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTAT 179572 || || || || ||||| ||||| || |||||||| || ||||| || |||||||| | Sbjct 121 AGCCGAAGAAACTTATTCAATGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGT 180 Query 179573 CGCCTTCAGCAATAAGCGTTGGCTACA 179599 || || |||||| |||||| |||| Sbjct 181 TGCTTTTTCCAATAAACGTTGGTTACA 207 >seq198248 Length=3867 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178366 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 178425 || ||||| || || |||||||| || |||||||||||||||||| | ||| | ||||| Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 178426 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGG 178481 ||||| ||||| || || |||||||| |||||||| || | | |||||||| || Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 276 >seq197639 Length=228 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 178471 GATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGT 178530 |||||||| ||| || | || |||||||| || | | ||||||||| |||||| Sbjct 219 GATAGTCAAGGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTGGT 160 Query 178531 ATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 |||||||| ||||| || ||||||||||| ||||||||||| ||||| || ||| |||| Sbjct 159 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCTATTGAA 100 >seq100777 Length=1053 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 179112 CAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTC 179171 ||| | ||||| || ||| ||||||| || || || || || |||| || ||||||||| Sbjct 1047 CAATTAGGGGGTCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTC 988 Query 179172 ATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGC 179230 ||| | || || || ||| | || || ||| || | | || ||||| |||||||| || Sbjct 987 ATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAAT-TACGACCTTATAATGCAATTGC 929 Query 179231 GTTTTCTGGTCCAATTGCTGTCTTTGTGTCT 179261 || ||||| ||||||||||| ||||| ||| Sbjct 928 ATTCTCTGGCCCAATTGCTGTTTTTGTTTCT 898 >seq198608 Length=9413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 179595 CTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATT 179654 || |||||||||||||| ||||| || || | ||| | |||| | |||| | Sbjct 2987 CTTCATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTA 2928 Query 179655 ATTGGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCA 179714 | ||||| || || ||||| | || |||||||| ||||| || || || | || || Sbjct 2927 GTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCG 2868 Query 179715 GAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGA 179764 || |||||||| || ||||| ||||| ||||| ||||| || || || || Sbjct 2867 GAAGATCCTGAATTTGAGACTTTCTACACCAA-AACATTCTCTTAAACGA 2819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594814918870480