Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq194317 122 8e-23 seq194543 109 5e-19 seq176217 107 2e-18 seq160375 104 2e-17 seq156113 98.7 9e-16 seq181690 96.9 3e-15 >seq194317 Length=10706 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || | || || || |||||| |||||||| ||||| ||||||| Sbjct 1306 CCGCCGCGAAGGCGGAGGACGAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCT 1365 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || ||||||||||||||||| || |||||||||||||| | || Sbjct 1366 AGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCTGGTGGT 1425 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || |||||| || | ||||||| || | | | ||||| || || || Sbjct 1426 ATGCCTTCTTTGTCC-TGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGGATTCAAC 1484 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | ||||| ||||| || || | || || ||||| |||||||| || Sbjct 1485 CTCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGACGAAGATCTGCATCTT 1535 >seq194543 Length=10949 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||||||||| | || || || |||||| ||| ||||| ||||| || |||| Sbjct 3253 GCCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGC 3194 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || |||| |||||||| || || || || || || ||||| || |||| || Sbjct 3193 GAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGG 3134 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||||| ||| || | ||||||| ||| | | | ||| ||| || | Sbjct 3133 GATTCCTTCCTTATCC-TGGATCTTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGA 3075 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || ||||| || || || || ||||| |||||||| Sbjct 3074 CCTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT 3026 >seq176217 Length=4970 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||| || ||| ||||| || ||||||||||||| Sbjct 1836 CCACCTCGGAGGCGAAGCACCAAATGAAGAGTGGATTCCTTTTGGATGTTATAGTCGGCA 1895 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||| ||||| |||| | ||| || |||| ||| Sbjct 1896 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAACCTCTGCTGATCCGGTGGA 1955 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| || ||| || ||| | | | | | || ||| ||| || Sbjct 1956 ATCCCCTCCTTATCTTGGATCTTCGCCTTGACATTATCA-ATTGTATCGGAACTCTCAAC 2014 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||||| || || || |||| ||||| || ||||||||||| Sbjct 2015 CTCCAAGGTTATAGTCTTCCCGGTCAATGTCTTCACAAAAATCTGCAT 2062 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || ||| ||||| || || || || |||| ||||| || Sbjct 2529 AGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGGCAAGGGTACGG 2588 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| ||||| ||||||||||| || || || | || ||||| | ||||| | ||| Sbjct 2589 CCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCC 2648 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820 |||||| || | || |||| ||| | | ||||| ||| || ||||| | Sbjct 2649 TTGTCC-TGGATCTTAGCTTTGACGTTATCAATTGTGTCAGAGCT---TTCGACCTCTAA 2704 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| || ||||| ||||| ||||| || |||||| Sbjct 2705 AGTGATGGTTTTTCCTGTCAGGGTCTTCACGAATATTTGCATG 2747 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| || || || |||||| || ||||| || |||| ||||| || Sbjct 2757 AGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGG 2816 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||| ||||||||||| || || || | || ||||| | ||||| | ||| Sbjct 2817 CCATCCTCGAGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCC 2876 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820 |||||| || | || |||| ||| | | |||||| ||| || ||||||| Sbjct 2877 TTGTCC-TGGATCTTAGCTTTGACGTTATCAATAGTGTCAGAGCT---TTCGACCTCCAA 2932 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| || ||||| || || ||||| |||||||| Sbjct 2933 AGTGATGGTTTTTCCTGTCAGGGTTTTCACGAAGATCTGCAT 2974 Score = 82.4 bits (90), Expect = 7e-11 Identities = 163/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||||||| | ||||| || || || |||||||||||||| ||||||| Sbjct 2064 CCACCGCGTAGACGCAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCT 2123 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 | || | | | || || | || || || || || |||| | ||| ||||| ||||| Sbjct 2124 AAAGTCCTCCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGCGGG 2183 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGA---C 41809 | | | ||||||||| ||| || ||||| | | || | ||||| ||| | Sbjct 2184 ATC-CCCTCCTTGTCTTGGATCTTCGCCTTCACATTATCG--ATGGTGTC---CGAACTC 2237 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||||| ||||| || || || |||| ||||| ||||| || |||||| Sbjct 2238 TCAACCTCCAAGGTTATAGTCTTTCCAGTCAATGTCTTGACGAAGATTTGCATG 2291 >seq160375 Length=3367 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| || || ||| |||||||| ||||| ||||| | Sbjct 925 GCCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGC 984 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||| || | || ||||||||||| |||||||| || || | ||| ||||| | || Sbjct 985 CAAGGTACGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGG 1044 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||| | ||| |||| || | ||| | | ||||||| ||||| Sbjct 1045 GATACCCTCCTTGT-CTTGAATTTTCGCCTTCACGTTATCAATAGTGTCGGAGCTCTCCA 1103 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || |||| ||||| || || |||||||| Sbjct 1104 CCTCCAAGGTGATGGTCTTGCCGGTCAAGGTCTTAACAAAGATCTGCAT 1152 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || |||||||| ||| ||| ||||||||||| || || | Sbjct 14 CCACCACGGAGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTGTAATCAGCC 73 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || |||||||| || ||||| || || | ||| || |||| || Sbjct 74 AAGGTACGGCCATCCTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGATCCGGTGGG 133 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| || |||| ||| | | | |||||| ||| || Sbjct 134 ATCCCCTCCTTATCCTGGATCTTGGCCTTC-ACGTTGTCAATTGTGTCGGAGCTCTCAAC 192 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || ||||| || || || || || ||||| ||||||||| Sbjct 193 CTCCAAGGTGATGGTTTTGCCGGTGAGGGTTTTCACGAAGATCTGCATG 241 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| |||||||||||||| ||||| | | ||| || Sbjct 707 AGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGG 766 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || ||||| |||||||| || || | ||| ||||||| || | | |||| Sbjct 767 CCATCCTCAAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCCTCC 826 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || || | ||| | | | |||||| ||| ||||||| || Sbjct 827 TTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAAGT 885 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| || || ||||||||| Sbjct 886 GATTGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATG 925 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| |||||||| || || ||||| | | ||| || Sbjct 251 AGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCCAAGGTACGG 310 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || ||||| || || | ||| || |||| || | | |||| Sbjct 311 CCATCCTCAAGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCC 370 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| || ||||| || | || | |||| ||||||||||| || Sbjct 371 TTATCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGAACTCTCCACCTCCAAGGT 429 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| |||||||||||||| Sbjct 430 GATTGTCTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 468 >seq156113 Length=3066 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||||| ||| ||||||||| |||||||| || | ||||| ||| | || || Sbjct 1095 CACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCTAGGGTTCGCCCATCTTC 1036 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | ||||| || ||||| |||| ||||| || |||| |||| | |||||||| Sbjct 1035 CAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGAATCCCTTCCTTGTCTTG 976 Query 41773 GATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 |||||| ||| || | || | ||| ||| ||| || |||| || || ||| Sbjct 975 GATTTTGGCCTTTACATTGTCG--ATAGTATCGGAGCTCTCGACTTCCAAGGTGATTGTT 918 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| |||||||| Sbjct 917 TTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886 >seq181690 Length=5866 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| ||| || ||| ||||| || ||||||||||| | | Sbjct 2507 CCACCTCGGAGGCGAAGGACCAAATGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGCG 2566 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || |||||||| || || || |||| | ||| || || | ||| Sbjct 2567 AGGGTACGGCCGTCCTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCTGGCGGA 2626 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||| |||| | ||| | |||| |||| ||| | | |||||| ||||| Sbjct 2627 ATACCCTCTTTGT-CTTGAATCTTTGACTTC-ACGTTATCAATAGTGTCAGAGTTCTCCA 2684 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || || || || |||| ||||| |||||||||||||| Sbjct 2685 CTTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 2733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||||||||| ||||| | Sbjct 2735 CCACCACGAAGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCT 2794 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || | || || || || || |||| | ||| || |||| ||| Sbjct 2795 AAAGTCCTTCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGCGGA 2854 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCA 41813 | | |||||||||| ||| ||||||| | ||| | || | ||| || | ||||| Sbjct 2855 ATACCCTCCTTGTCC-TGAATTTTTGCCTTTACGTTGTCA-ATTGTGTCTGAACTCTCCA 2912 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || |||| ||||| || || || ||||| Sbjct 2913 CCTCCAAAGTGATAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461147066903600