Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq194317 122 8e-23
seq194543 109 5e-19
seq176217 107 2e-18
seq160375 104 2e-17
seq156113 98.7 9e-16
seq181690 96.9 3e-15
>seq194317
Length=10706
Score = 122 bits (134), Expect = 8e-23
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|||||||| || || | || || || |||||| |||||||| ||||| |||||||
Sbjct 1306 CCGCCGCGAAGGCGGAGGACGAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCT 1365
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | |||| || ||||||||||||||||| || |||||||||||||| | ||
Sbjct 1366 AGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCTGGTGGT 1425
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || || |||||| || | ||||||| || | | | ||||| || || ||
Sbjct 1426 ATGCCTTCTTTGTCC-TGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGGATTCAAC 1484
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||| | ||||| ||||| || || | || || ||||| |||||||| ||
Sbjct 1485 CTCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGACGAAGATCTGCATCTT 1535
>seq194543
Length=10949
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||||||||| | || || || |||||| ||| ||||| ||||| || ||||
Sbjct 3253 GCCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGC 3194
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| || || |||| |||||||| || || || || || || ||||| || |||| ||
Sbjct 3193 GAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGG 3134
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | ||||| ||| || | ||||||| ||| | | | ||| ||| || |
Sbjct 3133 GATTCCTTCCTTATCC-TGGATCTTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGA 3075
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || ||||| || || || || ||||| ||||||||
Sbjct 3074 CCTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT 3026
>seq176217
Length=4970
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| ||| || ||| ||||| || |||||||||||||
Sbjct 1836 CCACCTCGGAGGCGAAGCACCAAATGAAGAGTGGATTCCTTTTGGATGTTATAGTCGGCA 1895
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||||||||| ||||| |||| | ||| || |||| |||
Sbjct 1896 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAACCTCTGCTGATCCGGTGGA 1955
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||| || ||| || ||| | | | | | || ||| ||| ||
Sbjct 1956 ATCCCCTCCTTATCTTGGATCTTCGCCTTGACATTATCA-ATTGTATCGGAACTCTCAAC 2014
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| ||||| || || || |||| ||||| || |||||||||||
Sbjct 2015 CTCCAAGGTTATAGTCTTCCCGGTCAATGTCTTCACAAAAATCTGCAT 2062
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/223 (70%), Gaps = 8/223 (4%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||| || ||| ||||| || || || || |||| ||||| ||
Sbjct 2529 AGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGGCAAGGGTACGG 2588
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| ||||| ||||||||||| || || || | || ||||| | ||||| | |||
Sbjct 2589 CCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCC 2648
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820
|||||| || | || |||| ||| | | ||||| ||| || ||||| |
Sbjct 2649 TTGTCC-TGGATCTTAGCTTTGACGTTATCAATTGTGTCAGAGCT---TTCGACCTCTAA 2704
Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || ||||| || ||||| ||||| ||||| || ||||||
Sbjct 2705 AGTGATGGTTTTTCCTGTCAGGGTCTTCACGAATATTTGCATG 2747
Score = 93.3 bits (102), Expect = 4e-14
Identities = 156/222 (70%), Gaps = 8/222 (4%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | |||| || || || |||||| || ||||| || |||| ||||| ||
Sbjct 2757 AGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGG 2816
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || ||||| ||||||||||| || || || | || ||||| | ||||| | |||
Sbjct 2817 CCATCCTCGAGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCC 2876
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820
|||||| || | || |||| ||| | | |||||| ||| || |||||||
Sbjct 2877 TTGTCC-TGGATCTTAGCTTTGACGTTATCAATAGTGTCAGAGCT---TTCGACCTCCAA 2932
Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || ||||| || ||||| || || ||||| ||||||||
Sbjct 2933 AGTGATGGTTTTTCCTGTCAGGGTTTTCACGAAGATCTGCAT 2974
Score = 82.4 bits (90), Expect = 7e-11
Identities = 163/234 (70%), Gaps = 12/234 (5%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||||||||| | ||||| || || || |||||||||||||| |||||||
Sbjct 2064 CCACCGCGTAGACGCAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCT 2123
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754
| || | | | || || | || || || || || |||| | ||| ||||| |||||
Sbjct 2124 AAAGTCCTCCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGCGGG 2183
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGA---C 41809
| | | ||||||||| ||| || ||||| | | || | ||||| ||| |
Sbjct 2184 ATC-CCCTCCTTGTCTTGGATCTTCGCCTTCACATTATCG--ATGGTGTC---CGAACTC 2237
Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| ||||||| ||||| || || || |||| ||||| ||||| || ||||||
Sbjct 2238 TCAACCTCCAAGGTTATAGTCTTTCCAGTCAATGTCTTGACGAAGATTTGCATG 2291
>seq160375
Length=3367
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | ||||| || || ||| |||||||| ||||| ||||| |
Sbjct 925 GCCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGC 984
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| ||| || | || ||||||||||| |||||||| || || | ||| ||||| | ||
Sbjct 985 CAAGGTACGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGG 1044
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||||| | ||| |||| || | ||| | | ||||||| |||||
Sbjct 1045 GATACCCTCCTTGT-CTTGAATTTTCGCCTTCACGTTATCAATAGTGTCGGAGCTCTCCA 1103
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || || || || |||| ||||| || || ||||||||
Sbjct 1104 CCTCCAAGGTGATGGTCTTGCCGGTCAAGGTCTTAACAAAGATCTGCAT 1152
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || |||||||| ||| ||| ||||||||||| || || |
Sbjct 14 CCACCACGGAGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTGTAATCAGCC 73
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || || |||||||| || ||||| || || | ||| || |||| ||
Sbjct 74 AAGGTACGGCCATCCTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGATCCGGTGGG 133
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||| ||| ||| || |||| ||| | | | |||||| ||| ||
Sbjct 134 ATCCCCTCCTTATCCTGGATCTTGGCCTTC-ACGTTGTCAATTGTGTCGGAGCTCTCAAC 192
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| || || ||||| || || || || || ||||| |||||||||
Sbjct 193 CTCCAAGGTGATGGTTTTGCCGGTGAGGGTTTTCACGAAGATCTGCATG 241
Score = 96.9 bits (106), Expect = 3e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| || || ||| |||||||||||||| ||||| | | ||| ||
Sbjct 707 AGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGG 766
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || || ||||| |||||||| || || | ||| ||||||| || | | ||||
Sbjct 767 CCATCCTCAAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCCTCC 826
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| || | || || | ||| | | | |||||| ||| ||||||| ||
Sbjct 827 TTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAAGT 885
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || |||| ||||| || || |||||||||
Sbjct 886 GATTGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATG 925
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| || || ||| |||||||| || || ||||| | | ||| ||
Sbjct 251 AGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCCAAGGTACGG 310
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||| || ||||| || || | ||| || |||| || | | ||||
Sbjct 311 CCATCCTCAAGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCC 370
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823
|| ||| ||| || ||||| || | || | |||| ||||||||||| ||
Sbjct 371 TTATCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGAACTCTCCACCTCCAAGGT 429
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || |||| ||||| ||||||||||||||
Sbjct 430 GATTGTCTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 468
>seq156113
Length=3066
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||||||||||| ||| ||||||||| |||||||| || | ||||| ||| | || ||
Sbjct 1095 CACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCTAGGGTTCGCCCATCTTC 1036
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
| ||||| || ||||| |||| ||||| || |||| |||| | ||||||||
Sbjct 1035 CAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGAATCCCTTCCTTGTCTTG 976
Query 41773 GATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830
|||||| ||| || | || | ||| ||| ||| || |||| || || |||
Sbjct 975 GATTTTGGCCTTTACATTGTCG--ATAGTATCGGAGCTCTCGACTTCCAAGGTGATTGTT 918
Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || || || ||||| ||||||||
Sbjct 917 TTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886
>seq181690
Length=5866
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||| ||| || ||| ||||| || ||||||||||| | |
Sbjct 2507 CCACCTCGGAGGCGAAGGACCAAATGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGCG 2566
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| || |||||||| || || || |||| | ||| || || | |||
Sbjct 2567 AGGGTACGGCCGTCCTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCTGGCGGA 2626
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | ||| |||| | ||| | |||| |||| ||| | | |||||| |||||
Sbjct 2627 ATACCCTCTTTGT-CTTGAATCTTTGACTTC-ACGTTATCAATAGTGTCAGAGTTCTCCA 2684
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| |||| || || || || || |||| ||||| ||||||||||||||
Sbjct 2685 CTTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 2733
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || || ||||||||||||||| ||||| |
Sbjct 2735 CCACCACGAAGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCT 2794
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || | | || || | || || || || || |||| | ||| || |||| |||
Sbjct 2795 AAAGTCCTTCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGCGGA 2854
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCA 41813
| | |||||||||| ||| ||||||| | ||| | || | ||| || | |||||
Sbjct 2855 ATACCCTCCTTGTCC-TGAATTTTTGCCTTTACGTTGTCA-ATTGTGTCTGAACTCTCCA 2912
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || || || || |||| ||||| || || || |||||
Sbjct 2913 CCTCCAAAGTGATAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461147066903600
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