Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq25477 107 4e-18 seq46009 91.5 3e-13 seq25475 86.0 1e-11 seq51626 84.2 5e-11 >seq25477 Length=343 Score = 107 bits (118), Expect = 4e-18 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGG 230453 || |||||||||| || || ||||| |||||||| || |||| ||| || || |||| Sbjct 119 GATGCAGTTGAAATTGAGAAAGAGTTTATTTGTGAGGCGCTTCCTTGT-GCTTTGGTTGG 177 Query 230454 CATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGT-TG 230512 ||||||| || | ||| | |||| || || || || || || | ||| |||| || Sbjct 178 GATGAACGGAGAGTTAATGAGTAAGTATATTGAGTTTGTTGCAGATAG-ATTGTTGTGTG 236 Query 230513 CACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTT 230572 | |||| | | |||||| || || || |||| || |||| | |||||| | || | Sbjct 237 AAGTTGGGTGTGGGAAAGTCTATAATGCTGAGAATCCTTTTGATTGGATGGAGTTGATAT 296 Query 230573 CGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | ||||||||||| || |||||||| || ||||| || Sbjct 297 CACTTCAAGGGAAAACTAACTTCTTTGAGAAGCGCGT 333 >seq46009 Length=1074 Score = 91.5 bits (100), Expect = 3e-13 Identities = 179/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 230391 TACA-GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT- 230448 |||| ||||| ||||||| || | ||||| | ||||| || | || ||| || || Sbjct 650 TACACGAAGCTGTTGAAATTGAGACCGAGTTTGTCTGTGATGCACTCCCTTGT-GCTTTG 708 Query 230449 ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTT 230508 |||||||||||| | | |||||| | |||||||| |||| || || ||| | | || Sbjct 709 ATTGGCATGAACTCAAAGCTTATGAGCCAGTACATAAAATTTGTTGCTGACAGGCTATTG 768 Query 230509 GTTGCACTTGGTTACGAGAAAGTGTAC-AACTCTAAGAACCCCTTTGCATTTATGGAGCT 230567 ||| | | |||| | ||| ||| || | || || ||||||| | |||||| | Sbjct 769 GTTTCCTTGGGTTGCACAAAAAATTACGAAGTGGAA-AATCCCTTTGATTGGATGGAGTT 827 Query 230568 CATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCC 230627 ||||| || ||||| ||| ||||||| || || | | || |||| ||||||| | | Sbjct 828 TATTTCTCTGCAAGGAAAGGCCAACTTTTTTGAGAGAAGGGTTGGTGATTATCAGAAGGC 887 Query 230628 TGGTGTGATG--AAGCC 230642 ||||||| ||||| Sbjct 888 ATCTGTGATGTCAAGCC 904 >seq25475 Length=2349 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGG 230453 || || ||||| | ||| | |||||| | || ||||| |||| || ||| || |||| Sbjct 1471 GACGCGGTTGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCTTG-CGCGTTGGTTGG 1413 Query 230454 CATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGC 230513 ||||||| ||| | ||| | ||| || || | || || || | | || | | Sbjct 1412 GATGAACGGTGATTTGATGAGTACGTATATTGAGTATGTTGCTGATAGGTTGTTGGGGGA 1353 Query 230514 ACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTC 230573 ||||| | | ||| | || || | ||| || |||| | ||||| || ||||| Sbjct 1352 GCTTGGGTGTGGGAAGATTTATAATGTGACGAATCCGTTTGATTGGATGGATCTGATTTC 1293 Query 230574 GCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633 |||||| |||||||||||||| || || ||||| || | || ||||||| | || || Sbjct 1292 GCTTCAGGGGAAGACCAACTTTTTTGAGAAGCGCGTTGGAGAGTATCAGAAGGCTTCGGT 1233 Query 230634 GATGAA 230639 |||||| Sbjct 1232 GATGAA 1227 >seq51626 Length=1787 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 61374 AGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGAT 61433 ||||||||||||| ||| | |||||| | || || |||||||||||| |||||||||| Sbjct 888 AGAGATTGGGGATTTGCTGGTGATTATGTGGAAGCAATGTGGTTGATGCTGCAACAAGAG 947 Query 61434 ACTCCAGATGACTACGTTATTGCGAC 61459 | || ||||| || ||| ||||||| Sbjct 948 AAGCCTGATGATTATGTTGTTGCGAC 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056812118949170