Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq25475 127 2e-24 >seq25475 Length=2349 Score = 127 bits (140), Expect = 2e-24 Identities = 565/876 (64%), Gaps = 29/876 (3%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | |||||| || || |||||||| || || |||| || || || ||| Sbjct 1245 TGATACTCTCCAACGCGCTTCTCAAAAAAGTTGGTCTTCCCCTGAAGCGAAATCAGATCC 1304 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || ||||||| ||||| || | | | || || |||| || || | | || Sbjct 1305 ATCCAATCAAACGGATTCGTCACATTATAAATCTTCCCACACCCAAGCTCCCCCAACAAC 1364 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 ||||| || ||| | || ||||| | ||| || || | |||||| || | | ||| Sbjct 1365 CTATCAGCAACATACTCAATATACGTACTCATCAAATCACCGTTCATCCCAACCA-ACGC 1423 Query 16856 ACC-GGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 | ||||| || || || ||| || | ||| || ||||||| || | ||| Sbjct 1424 GCAAGGAAGCGCGTCGCACACAAACTCCCT-CTCGATCTCAACCGCGTCACGCACAATCG 1482 Query 16914 TAGCAACTCGTTCCTCGGACGGTGTATGTTT----AAGATGTTTAAACATCAGACATGCG 16969 | || || || || || | || | ||| | ||| |||| || ||| ||| Sbjct 1483 TCTGCACGCGCTCTTC--ACTGAGTTTCTTTTTTAATAATGAGTAAAG--CAAACAAGCG 1538 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||||||||||| | || ||||| | ||||| ||||| ||||| || || || ||| Sbjct 1539 AAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTTAATCCTGGC 1598 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || || ||||| || | ||| || ||||| ||| || ||||| |||||||| Sbjct 1599 ATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAAAATATACCT 1658 Query 17090 TCGACGGATGCAAACGCGATTAATCGT-TCGGCGTACGTCGC-GTCTTTGTTACGAATCC 17147 || ||| | ||||| || | |||| | || ||| | || | | | | || |||| Sbjct 1659 TCAACGCAAGCAAATGCTA-CAATCCTCTCAGCGAATGTATCAGAC---GAATCG-ATCC 1713 Query 17148 ATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 ||||| | |||| || || |||| | || || ||||| || || || | ||| | Sbjct 1714 ATTTCATCGCCCATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCGCGTGAAACA 1773 Query 17208 A---TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 | |||| | | | ||| | || | ||||||| |||| ||| || ||||| | Sbjct 1774 AACGATTCT-TCTCTGCTGAA--TCTTTGATATACGCCTCGAGGAGAAGAGAATACATCT 1830 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324 | || || || ||||| || || ||||| |||||||| ||| || || || | |||| Sbjct 1831 CTGAATGGATATTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCTGAGATTT 1890 Query 17325 GAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384 | | ||| ||||| | | || ||||| || ||||| |||||| ||||| | Sbjct 1891 GGATTTCTTTCATGAATCTTCCGGCGAGATTCTCCAAGACGATTCCGTCGGAGGCGGCAA 1950 Query 17385 AAAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAACGCGCCAGTC 17442 | || || | | |||| || || | || | ||||| || | ||||| Sbjct 1951 AGAAGGCAAGGACATGCGAAACAAAGTGGCGCTCACCGTCGGTG--AGGGAGATCCAGTG 2008 Query 17443 CTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTT 17502 || ||||| ||| | ||| |||||||||| |||||| ||| || | || || || Sbjct 2009 CTGGTTATCTTGGGAGAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTCTT 2068 Query 17503 ATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| | ||| || | | |||||| || ||||| Sbjct 2069 GTACATTTCCCAGATTTTAGGGTATTGGATTGGGAA 2104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517062607038120