Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq46009 149 6e-31 seq25475 143 3e-29 seq25476 100 3e-16 >seq46009 Length=1074 Score = 149 bits (164), Expect = 6e-31 Identities = 384/579 (66%), Gaps = 11/579 (2%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || || || || || || || || |||||||| ||| ||||| || || || || | Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 ||||||||| ||||| || || | ||||||||| ||| || || || || ||| Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAAT 474 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 || || |||||| |||||||| | | | | ||||| | | || | ||| Sbjct 473 ATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTTA--- 417 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||| || | ||||||| || || | | |||| | |||| || || || Sbjct 416 ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATTG 357 Query 16442 AACAATTTCTCTTTTTC--CTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 |||||||| | || || |||||| | | ||||| || || | ||| ||||| |||| Sbjct 356 AACAATTTATGCTTCTCGACTGAATCTTTAATATAT--GTCTCCAACAGCAAACTATACA 299 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 | || || || || ||||| || ||||||||||| || ||||| |||||||||| | Sbjct 298 TCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGA 239 Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 |||| || || ||| | | | |||| ||||| ||||| || ||| || | Sbjct 238 TTTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTTG 179 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAA--TATGCCA 16677 ||||||| || | | ||| ||||| | || ||| || | | | || | ||| Sbjct 178 CAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCG-GAG-TCTGACAAGGTTGCCCA 121 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 || | || ||| | ||| | ||| |||||||| | ||||| || || || | ||||| Sbjct 120 ATGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTT 61 Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 ||| ||||| | ||| | | |||||| | || ||||| Sbjct 60 TTTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAA 22 >seq25475 Length=2349 Score = 143 bits (158), Expect = 3e-29 Identities = 299/436 (69%), Gaps = 17/436 (4%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| ||||| |||||||| || |||||||| | ||||| ||||| ||||||||||| Sbjct 1532 ACAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTTAA 1591 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 ||||||||| || ||||| || | |||||| |||||| || || ||||| || Sbjct 1592 TCCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAAAA 1651 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGT-TCCGCGTACGTAGCATCTTTATTAC 16379 |||||| ||||| | ||||| || | |||| | || ||| | ||| || || | Sbjct 1652 TATACCTTCAACGCAAGCAAATGCTA-CAATCCTCTCAGCGAATGTATCAGACGAAT--C 1708 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 | ||||||||| ||||||| || |||| ||||| ||||| || || || | Sbjct 1709 G-ATCCATTTCATCGCCCATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCGCGT 1767 Query 16440 TAAACAA---TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 |||||| |||| | | | |||| ||| | ||||||| || | || | | | Sbjct 1768 GAAACAAACGATTCT-TCTCTGCTGA--ATCTTTGATATACGCCTCGAGGAGAAGAGAAT 1824 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 |||| ||||| || || ||||| || || ||||| ||||| |||||| || ||||| | Sbjct 1825 ACATCTCTGAATGGATATTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCTG 1884 Query 16557 CTATTTG---TACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 ||||| | ||| || | |||| | | || || ||||| ||||| ||||| Sbjct 1885 AGATTTGGATTTCTTTCATG---AATCTTCCGGCGAGATTCTCCAAGACGATTCCGTCGG 1941 Query 16614 TTGCAGCAAAAAACGC 16629 || ||||| || || Sbjct 1942 AGGCGGCAAAGAAGGC 1957 >seq25476 Length=346 Score = 100 bits (110), Expect = 3e-16 Identities = 206/304 (68%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 16240 AAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGC 16299 ||| ||||| ||||||||||| || |||||| || || || || | |||||| || || Sbjct 1 AAGCTCGTTTGAAAAAGTTAATCCAGGCATTAAACCGCGCTTTTTAAGCCAGAAAATTGC 60 Query 16300 AGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGC 16359 | || || || || |||||||| |||||| | || ||||| | | || ||| || Sbjct 61 ACAGAAACTTCCAGAGAAAAATATACCTTCAACACAAGCGAAAGCAACGATTCTTTCAGC 120 Query 16360 GTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACA 16419 | | | | | || || ||||||||| ||||||| ||||| | || || Sbjct 121 GAATGAATCGGACGAAT--CG-ATCCATTTCAACGCCCATTCAGCTTTCTTAGCGATGCA 177 Query 16420 ATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGT 16479 | || || || ||||| | |||||| | || || ||||| | |||||||| Sbjct 178 AGGAATTGTATCAATGGCGTGAAACAAACGATTCTTCTCGGTGTTATCGTTGATATACGT 237 Query 16480 ATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATA 16539 || || || | ||| ||||| || || || || ||||| || || ||||| || || || Sbjct 238 TTCGATAAGGAGACTATACATCTCGGAATGGATATTCTCGATCGCGATCTGGAAACCGTA 297 Query 16540 GAAG 16543 |||| Sbjct 298 GAAG 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510937128903880