Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq22701 143 2e-29 seq22702 140 3e-28 >seq22701 Length=2303 Score = 143 bits (158), Expect = 2e-29 Identities = 456/697 (65%), Gaps = 10/697 (1%) Strand=Plus/Minus Query 18543 AAACGCGATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTC-GATACAA 18601 ||| | ||| ||||||| | || || || || |||||| ||| || | | | ||| Sbjct 1184 AAAGGTGATAGAACAGGGACTGGGACCTTGTCAAAATTTGGT-TGCCAGATGAGGTTCAA 1126 Query 18602 TTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGA 18661 | |||| | | ||||| ||| |||| || ||| | || |||||| | | || || || Sbjct 1125 TCTGCGCAGAGGCTTTCCGCTTCTAACAACTAAGAGAGTATTTTGGCGCGGGGTTGTTGA 1066 Query 18662 AGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATAT 18721 |||| | | ||||||||| | || ||||| || ||| | | | |||| || Sbjct 1065 AGAGCTTCTTTGGTTTATCAGTGGCTCAACAAATGCCATGGTGTTACAGGAAAAAGGCAT 1006 Query 18722 ACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAG 18781 || |||||||| | | | |||||| ||| || |||| | ||| || | |||| Sbjct 1005 TCATATATGGGACGGAAATGCATCGAGAGAATACCTTGATAGCATTGGTTTGAAAGAAAG 946 Query 18782 ACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATA 18841 | ||| ||| | || || |||| || || |||||||| || ||||| || | || Sbjct 945 GGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCAAAGTA 886 Query 18842 TAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGA 18901 || || || |||| | |||||| | |||||||| | |||||| | Sbjct 885 TACTAACATGCATGAGGACTACTCCGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAA 826 Query 18902 TACAATTAAAACA-AACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGG 18960 || || ||| || || || || ||||| || || | || | ||||||||| | Sbjct 825 TAAGAT-AAAGCATAATCCCGATGATCGACGCATCATCCTCTCAGCATGGAATCCATCTG 767 Query 18961 ATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACG 19020 || | ||||||| || || ||||| |||| ||| ||||| || || ||||| | Sbjct 766 ATCTTAAATTAATGGCTCTTCCACCATGCCACATGTTTGCACAGTTCTATGTGGCAAATG 707 Query 19021 GTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCA 19080 | || ||||| || ||| | || || |||| | || |||||||| || || ||||| | Sbjct 706 GGGAGTTATCGTGTCAAATGTATCAACGATCTGCCGACATGGGCCTGGGTGTGCCGTTTA 647 Query 19081 ACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCG 19140 | ||||| ||||| || | || | ||| | || |||||| | ||| | | Sbjct 646 ATATTGCATCTTATGCGCTCTTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCAG 587 Query 19141 GAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGC-TTTA 19199 | ||||| || ||| || |||||| ||||| ||||| |||||| | || || ||| Sbjct 586 GTGATTTTATCCATGTTATTGGGGATACACATGTTTACCGCAATCATGT-GAGGCCTTTG 528 Query 19200 AAAGTGCAGCTAGCTCGATCC--CCAAAACCTTTTCC 19234 | | ||||| | | || |||||||||||||| Sbjct 527 CAGGAACAGCT--CCAAAACCTGCCAAAACCTTTTCC 493 >seq22702 Length=2386 Score = 140 bits (154), Expect = 3e-28 Identities = 462/702 (66%), Gaps = 20/702 (3%) Strand=Plus/Minus Query 18543 AAACGCGATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTC-GATACAA 18601 ||| | ||| ||||||| | || || || || |||||| ||| || | | | ||| Sbjct 1267 AAAGGTGATAGAACAGGGACTGGGACCTTGTCAAAATTTGGT-TGCCAGATGAGGTTCAA 1209 Query 18602 TTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGA 18661 | |||| | | ||||| ||| |||| || ||| | || |||||| | | || || || Sbjct 1208 TCTGCGCAGAGGCTTTCCGCTTCTAACAACTAAGAGAGTATTTTGGCGCGGGGTTGTTGA 1149 Query 18662 AGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATAT 18721 |||| | | ||||||||| | || ||||| || ||| | | | |||| || Sbjct 1148 AGAGCTTCTTTGGTTTATCAGTGGCTCAACAAATGCCATGGTGTTACAGGAAAAAGGCAT 1089 Query 18722 ACACATATGGGAT-ATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAA 18780 || |||||||| ||| | | ||| || |||| || |||| | || || | | Sbjct 1088 TCATATATGGGACGATA-ATGCATCTAGGGAATTCCTTGATAGCATTGATTTGTCAGAGA 1030 Query 18781 GACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGC--GGA 18838 | | ||| ||| | || || |||| || || |||||||| || ||||| || || Sbjct 1029 GGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAGGT 970 Query 18839 ATATAAAGACTGTCAATCAAACTATTTACAG--CAAGGAATCGATCAGCTGCAAACTGTT 18896 ||| ||| | ||| | |||| || | |||||| | |||||||| | |||| Sbjct 969 ATACAAACATGCATAATGA--CTAT--ACTGGCCAAGGAGTTGATCAGCTTTTAGATGTT 914 Query 18897 ATAGATACAATTAAAACA-AACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCC 18955 || | | || ||| || || || || |||| || ||| | || | |||||||| Sbjct 913 ATCAACAAGAT-AAAGCATAATCCTGATGATAGACGGATCATTCTCTCTGCATGGAATCC 855 Query 18956 AAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGC 19015 | ||| | || |||| ||| || || ||||||| || ||||| || || || Sbjct 854 AGCAGATCTTAAATTGATGGCACTTCCACCCTGTCACATGTCTGCGCAGTTCTATGTAGC 795 Query 19016 AAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACC 19075 ||| || || ||||| || ||| | | ||| |||| | ||||||||||| || || || Sbjct 794 AAATGGGGAGTTATCGTGTCAAATGAATCAGCGATCTGCTGATATGGGCCTGGGTGTGCC 735 Query 19076 GTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 ||||||||||| ||||| || || || | ||| | || ||| || | |||| Sbjct 734 ATTCAACATTGCATCTTATGCCCTCCTGACATGCATGATTGCTCATATTTGTGAACTTGT 675 Query 19136 AACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATG- 19194 | || ||||| || ||| | |||||||||||| ||||| | |||| | || | Sbjct 674 TCCAGGTGATTTTATCCATGTTCTTGGGGATGCACATGTTTACCAAACTCATGT-GAGGC 616 Query 19195 CTTTAAAAGTGCAGCTAGCTCGATCC--CCAAAACCTTTTCC 19234 |||| | | |||||| | | || |||||||||||||| Sbjct 615 CTTTGCAGGAGCAGCTTCAT--AACCTGCCAAAACCTTTTCC 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399140488688655