Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq17518 223 4e-53 seq17517 223 4e-53 seq46009 178 2e-39 seq25476 93.3 5e-14 >seq17518 Length=2997 Score = 223 bits (246), Expect = 4e-53 Identities = 596/895 (67%), Gaps = 26/895 (3%) Strand=Plus/Minus Query 53683 ATCTATTACAAA-CATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 |||| ||||| | | || | |||||||| ||||| || ||||| ||||| ||| | | Sbjct 1640 ATCTCTTACATATCGTGGT-AATGCAATTGATGCAAGGTTACACACGGCAGTCTCTGTTG 1582 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 | | || | |||||||||||||| || || |||| || || || | ||||| Sbjct 1581 GACTTGTGTACTCAATTATCTCAGTGCACAGGTTTGATGACTTAATTGTGCCAAGATTTT 1522 Query 53802 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 | || || || || | || || ||||||||| |||| ||| | || | |||||||| | Sbjct 1521 GCTGGTTGCTTTTCCTATTGCAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTA 1462 Query 53862 TCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCT 53921 |||| || | | ||| || ||||| ||| ||| | | | || | | || Sbjct 1461 TCTGTGACTTCAAAATTGCAAACCAGA-GACTTTGTGCTTGA--ACAACCTTCTTTG-CT 1406 Query 53922 TTTC----TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGT-C 53976 |||| |||||| || | || |||| ||| | || || |||||| || | | | Sbjct 1405 TTTCCAGCTCTTTCATACTGGGTGTACAGATTCTCATATTCTTCACCCCAA-CAGTCTGC 1347 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGT 54034 ||| ||||| |||| || || | || ||||| || || | | || | |||| | Sbjct 1346 CAAACCAGGGGCCTCATTGGGGCAAAACAGGGACCAATCACCAT--TGCTCCGAACTCTT 1289 Query 54035 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCG 54094 | |||||| |||||||| | |||||| || ||||| ||||| | | ||||| || Sbjct 1288 TCCATAAAAAGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCC 1229 Query 54095 TTTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 54153 ||||| || || |||| || || | ||| | | | ||||| |||||| |||||||| Sbjct 1228 TTTCCGTGGTTTATTTTCAAC-TCCAAGAATTCAAATACATCAGCATGCCATGGTTCCAA 1170 Query 54154 GTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 54213 ||||| | | | | || | ||| |||||||||||| | |||| || |||| Sbjct 1169 GTATACAGCAAAAGCACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTC 1110 Query 54214 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 54273 ||| | || | || ||||||||| |||||||| || | ||||| || || || || Sbjct 1109 ATTGAACACACGCAGCATTGGAATGATACCATTAGACGTCCCATTTGTTCCACGAATGTA 1050 Query 54274 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333 ||| ||| || | || ||| || || | ||| ||||| || || |||| || Sbjct 1049 GCTGCCATATGCCCTTATGTTATGAACAGAAACACCAATCCCTCCAGCAGATTTACTAAT 990 Query 54334 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC---CAT-CATGT 54389 | ||||| ||| || |||||||| || || || ||||||||||| ||| ||| | Sbjct 989 GACAGCGCACTCTTTCAATGTATCATAAATCCCTTCAATACTATCATCTTTCATACATAT 930 Query 54390 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449 ||| || || ||| || || | | | ||| || ||||| || | || |||| Sbjct 929 CAAG----AAGCAACTACTCAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGAG 874 Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT 54509 |||| || || |||||| | | ||| | | || || |||| | ||| || || |||| Sbjct 873 AAGCATGAGTGAACCATCTCTGAGACATCAAATGATAAGTCTTAACAGCGGATTCAATAT 814 Query 54510 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 54564 | | ||||| || || | || | ||||| ||| || ||||| |||||||| Sbjct 813 CATGCTTGTGAATCCCAACAGAAACCCTCATTATCATATGTTGAGGCCTTTCAAC 759 >seq17517 Length=2996 Score = 223 bits (246), Expect = 4e-53 Identities = 596/895 (67%), Gaps = 26/895 (3%) Strand=Plus/Minus Query 53683 ATCTATTACAAA-CATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 |||| ||||| | | || | |||||||| ||||| || ||||| ||||| ||| | | Sbjct 1639 ATCTCTTACATATCGTGGT-AATGCAATTGATGCAAGGTTACACACGGCAGTCTCTGTTG 1581 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 | | || | |||||||||||||| || || |||| || || || | ||||| Sbjct 1580 GACTTGTGTACTCAATTATCTCAGTGCACAGGTTTGATGACTTAATTGTGCCAAGATTTT 1521 Query 53802 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 | || || || || | || || ||||||||| |||| ||| | || | |||||||| | Sbjct 1520 GCTGGTTGCTTTTCCTATTGCAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTA 1461 Query 53862 TCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCT 53921 |||| || | | ||| || ||||| ||| ||| | | | || | | || Sbjct 1460 TCTGTGACTTCAAAATTGCAAACCAGA-GACTTTGTGCTTGA--ACAACCTTCTTTG-CT 1405 Query 53922 TTTC----TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGT-C 53976 |||| |||||| || | || |||| ||| | || || |||||| || | | | Sbjct 1404 TTTCCAGCTCTTTCATACTGGGTGTACAGATTCTCATATTCTTCACCCCAA-CAGTCTGC 1346 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGT 54034 ||| ||||| |||| || || | || ||||| || || | | || | |||| | Sbjct 1345 CAAACCAGGGGCCTCATTGGGGCAAAACAGGGACCAATCACCAT--TGCTCCGAACTCTT 1288 Query 54035 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCG 54094 | |||||| |||||||| | |||||| || ||||| ||||| | | ||||| || Sbjct 1287 TCCATAAAAAGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCC 1228 Query 54095 TTTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 54153 ||||| || || |||| || || | ||| | | | ||||| |||||| |||||||| Sbjct 1227 TTTCCGTGGTTTATTTTCAAC-TCCAAGAATTCAAATACATCAGCATGCCATGGTTCCAA 1169 Query 54154 GTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 54213 ||||| | | | | || | ||| |||||||||||| | |||| || |||| Sbjct 1168 GTATACAGCAAAAGCACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTC 1109 Query 54214 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 54273 ||| | || | || ||||||||| |||||||| || | ||||| || || || || Sbjct 1108 ATTGAACACACGCAGCATTGGAATGATACCATTAGACGTCCCATTTGTTCCACGAATGTA 1049 Query 54274 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333 ||| ||| || | || ||| || || | ||| ||||| || || |||| || Sbjct 1048 GCTGCCATATGCCCTTATGTTATGAACAGAAACACCAATCCCTCCAGCAGATTTACTAAT 989 Query 54334 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC---CAT-CATGT 54389 | ||||| ||| || |||||||| || || || ||||||||||| ||| ||| | Sbjct 988 GACAGCGCACTCTTTCAATGTATCATAAATCCCTTCAATACTATCATCTTTCATACATAT 929 Query 54390 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449 ||| || || ||| || || | | | ||| || ||||| || | || |||| Sbjct 928 CAAG----AAGCAACTACTCAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGAG 873 Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT 54509 |||| || || |||||| | | ||| | | || || |||| | ||| || || |||| Sbjct 872 AAGCATGAGTGAACCATCTCTGAGACATCAAATGATAAGTCTTAACAGCGGATTCAATAT 813 Query 54510 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 54564 | | ||||| || || | || | ||||| ||| || ||||| |||||||| Sbjct 812 CATGCTTGTGAATCCCAACAGAAACCCTCATTATCATATGTTGAGGCCTTTCAAC 758 >seq46009 Length=1074 Score = 178 bits (196), Expect = 2e-39 Identities = 399/586 (68%), Gaps = 20/586 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || ||||| ||||| ||||||||||||||| |||| ||| || || || || || Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || |||||||| || | |||||||||||| ||||||| | || || ||| || || || Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGG-CACAGAAGCTTCCTGAGAAAAA 475 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA---TAACCGGCGCTGTCATG 24310 || ||||| || ||||| ||| ||| || || || || || |||| | Sbjct 474 TATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTTA-- 417 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | ||||| || |||||| || |||||||| | | || || ||||| Sbjct 416 -ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATT 358 Query 24371 AAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATAC 24428 || | || | | ||| ||| |||||||| |||||| || | || | ||||||| Sbjct 357 GAACA-AT-TTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATAC 300 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 24488 || || |||||||| || || || || || ||||| |||||||| | |||||| | Sbjct 299 ATCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGG 240 Query 24489 ATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 || || || || || || ||| | | | || ||||| || || ||||| ||| | Sbjct 239 ATTTGAACGTC-ATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGT 181 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC---GTCTGGTGTTAGTTTATT 24604 ||||||||| || | || ||| ||| || | || || ||||| || || Sbjct 180 TGCAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTG--ACAAGGTT-GC 124 Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 ||||| || | ||| | || | ||| |||||||| | ||||| || || || || Sbjct 123 CCAATGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGC 64 Query 24665 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 |||||| ||||| | ||||| | | ||| |||||||||| ||| Sbjct 63 CTTTTTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAACATA 18 >seq25476 Length=346 Score = 93.3 bits (102), Expect = 5e-14 Identities = 205/301 (68%), Gaps = 10/301 (3%) Strand=Plus/Plus Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 ||||| ||||| || | ||| ||||||| || |||||||||||||| || || | | || Sbjct 5 TCGTTTGAAAAAGTTAATCCAGGCATTAAACCGCGCTTTTTAAGCCAGAAAATTG-CACA 63 Query 24237 -AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--A 24293 || |||||| || || || ||||| || || || |||| | |||||| | | Sbjct 64 GAAACTTCCAGAGAAAAATATACCTTCAACACAAGCGAAAGCAACGATTCTTTCAGCGAA 123 Query 24294 T-AACCGG-CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 24351 | || ||| || || ||||| || ||||| || || ||||| | |||| Sbjct 124 TGAATCGGACGA----ATCGATCCATTTCAACGCCCATTCAGCTTTCTTAGCGATGCAAG 179 Query 24352 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 24411 | ||||| || || || | ||| | | || || || | |||| || | ||| || | Sbjct 180 GAATTGTATCAATGGCGTGAAACAAACGATTCTTCTCGGTGTTATCGTTGATATACGTTT 239 Query 24412 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 24471 | || | ||||||||||| || ||||| || || || || || || || || ||||||| Sbjct 240 CGATAAGGAGACTATACATCTCGGAATGGATATTCTCGATCGCGATCTGGAAACCGTAGA 299 Query 24472 A 24472 | Sbjct 300 A 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593167516738320