Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2804 102 7e-17 seq48696 89.7 4e-13 seq34025 84.2 2e-11 >seq2804 Length=712 Score = 102 bits (112), Expect = 7e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | || || ||||| || ||||| || || || Sbjct 483 CCACCACGGAGACGGAGCACCAAATGGAGTGTAGATTCCTTCTGTATGTTGTAATCAGCA 424 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| || |||||||| ||| |||| || | ||||||||| || Sbjct 423 AGGGTACGGCCATCCTCTAGTTGTTTGCCGGCAAAAATGAGACGCTGCTGGTCAGGTGGG 364 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| || || | | | | ||||| ||| | Sbjct 363 ATCCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACT 304 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCT 21184 || | || ||||||||||| || | || || || || |||||||| |||||||| Sbjct 303 TCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAAATTTGCATCTTGAATCT 248 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||| | ||| | ||| ||||| || |||||||| || || || | ||| | | ||||| Sbjct 694 CACAAGATGGAGAGTTGACTCTTTCTGAATGTTGTAATCTGCTAAAGTTCTGCCATCCTC 635 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||||||||| ||| | ||||| ||||| ||||| || | ||| || || || Sbjct 634 AAGCTGTTTGCCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCCTG 575 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 ||||| ||| || | | | | |||||| | ||| || | ||| |||||||| Sbjct 574 AATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCGACCTCAAGGGTGATGGTCTT 515 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || | ||||| ||||| |||||||| Sbjct 514 TCCAGTGAGAGTTTTCACAAAGATTTGCAT 485 >seq48696 Length=1151 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | || || ||||| || ||||| ||||| || Sbjct 303 CCTCCACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCA 244 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||| |||||||| || || | || || | |||||||| ||| Sbjct 243 AGAGTACGACCGTCCTCAAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGA 184 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | ||| || ||| ||| Sbjct 183 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACC 124 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | || |||||||| ||||| | ||||| || ||||||||||| |||| Sbjct 123 TCGAGAGTGATGGTCTTTCCGGTGAGGGTTTTAACGAATATTTGCATCTTGA 72 >seq34025 Length=456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| ||||||||||| || |||| ||| || | || || ||||| || ||| Sbjct 101 GTGGACTCCTTCTGAATGTTATAATCGGCCAAAGTTCGGCCATCTTCAAGCTGCTTTCCC 42 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTT 21079 ||| |||| | |||||||||||| ||| | || ||||| Sbjct 41 GCAAAAATCAATCTCTGCTGGTCTGGGGGAATACCCTCCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421874983582844