Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq22701 145 1e-29 seq2803 140 5e-28 seq2802 140 5e-28 seq2801 127 3e-24 seq2799 127 3e-24 seq56145 113 7e-20 seq56144 113 7e-20 seq56143 113 7e-20 seq60039 93.3 6e-14 seq62831 84.2 3e-11 >seq22701 Length=2303 Score = 145 bits (160), Expect = 1e-29 Identities = 353/534 (66%), Gaps = 3/534 (1%) Strand=Plus/Plus Query 205398 ATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAAT 205457 ||||| || |||||| ||| ||||| ||| ||| | | | | ||| ||||| Sbjct 555 ATGTGTATCCCCAATAACATGGATAAAATCACCTGGAACAAGGTCACAAACATGAGCAAT 614 Query 205458 CATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGC 205517 ||| | ||||| | |||| |||| |||||| || ||||| | ||||| || || Sbjct 615 CATGCATGTCAAGAGCGCATAAGATGCAATATTAAACGGCACACCCAGGCCCATGTCGGC 674 Query 205518 TGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGTACAAA 205577 |||| ||||||||||||||| | | | | ||| |||| || ||| |||| Sbjct 675 AGATCGTTGATACATTTGACACGATA---ACTCCCCATTTGCCACATAGAACTGTGCAAA 731 Query 205578 ACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATAT 205637 || || ||||| | | |||| || || ||| |||||||| |||| | || Sbjct 732 CATGTGGCATGGTGGAAGAGCCATTAATTTAAGATCAGATGGATTCCATGCTGAGAGGAT 791 Query 205638 TATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAA 205697 || || | || || |||| ||||| ||||| |||| || | | |||||||| Sbjct 792 GATGCGTCGATCATCGGGATTATGCTTTATCTTATTAATAACATCTAAAAGCTGATCAAA 851 Query 205698 TCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTG 205757 |||||| | || | || ||| | | |||| || |||||||| || | ||| || Sbjct 852 TCCTTGGCCGGAGTAGTCCTCATGCATGTTAGTATACTTTGCACCAAAGTGCCTCCACTG 911 Query 205758 AAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttat 205817 ||| |||||||| || ||||| ||||| || | || || || |||||| | | | Sbjct 912 AAACCCATAAACAGGTCCTAAGTCACCCTCCTCCCTTTCTTTCAAACCAATGCTATCAAG 971 Query 205818 atattttaatgatccattttcatcccaaatatggattcctttattttttaGAATATTTGT 205877 |||| | ||| ||||| | ||||| ||||| || ||||| | | || | | | Sbjct 972 GTATTCTCTCGATGCATTTCCGTCCCATATATGAATGCCTTTTTCCTGTAACACCATGGC 1031 Query 205878 ATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAA 205931 ||| ||||| ||| |||||||| | | |||||||||| || | |||||| Sbjct 1032 ATTTGTTGAGCCACTGATAAACCAAAGAAGCTCTTCAACAACCCCGCGCCAAAA 1085 >seq2803 Length=533 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || |||||| | ||| | ||| | Sbjct 421 ATGCAAATTTTTGTCAAGACCCTTACCGGAAAGACCATAACTTTGGAGGTAGAAAGTTCT 362 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | || |||||||| || ||||| || || || || || || Sbjct 361 GATACAATTGATAATGTGAAGACTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 302 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| || || ||||| |||||| |||| || | | ||||||||| Sbjct 301 CAGAGGCTAATTTTTGCTGGTAAGCAATTGGAGGATGGTCGTACTCTGGCTGATTATAAT 242 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || ||||| ||| ||||| | ||| | ||| | || ||||| Sbjct 241 ATACAGAAGGAATCTACTCTGCATCTTGTTCTTCGTCTGCGTGGTGG 195 >seq2802 Length=1024 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || |||||| | ||| | ||| | Sbjct 912 ATGCAAATTTTTGTCAAGACCCTTACCGGAAAGACCATAACTTTGGAGGTAGAAAGTTCT 853 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | || |||||||| || ||||| || || || || || || Sbjct 852 GATACAATTGATAATGTGAAGACTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 793 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| || || ||||| |||||| |||| || | | ||||||||| Sbjct 792 CAGAGGCTAATTTTTGCTGGTAAGCAATTGGAGGATGGTCGTACTCTGGCTGATTATAAT 733 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || ||||| ||| ||||| | ||| | ||| | || ||||| Sbjct 732 ATACAGAAGGAATCTACTCTGCATCTTGTTCTTCGTCTTCGCGGTGG 686 >seq2801 Length=469 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||| | || ||||||||||| ||| | ||| | || | Sbjct 73 ATGCAAATCTTTGTGAAAACATTGACCGGCAAAACTATCACTCTTGAGGTGGAGAGTTCT 132 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | ||| ||||| |||||||| |||||||| || |||||||| Sbjct 133 GATACCATAGACAACGTGAAATCTAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAG 192 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||| || |||||||| || ||| |||| || | | ||||| || Sbjct 193 CAAAGGCTTATCTTTGCTGGGAAACAATTGGAAGATGGTCGCACCCTTGCTGATTACAAC 252 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| | || | || | || || ||||||| || Sbjct 253 ATCCAGAAGGAATCCACTCTTCACCTTGTACTCCGATTGAGAGGTGGAAT 302 >seq2799 Length=391 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || ||||| || || || || | ||| |||| | Sbjct 68 ATGCAGATATTTGTGAAGACTCTGACAGGAAAGACCATCACCCTTGAGGTTGAGAGTTCT 127 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || || || ||||| ||||| ||||| ||||| ||||| Sbjct 128 GACACAATTGACAATGTGAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCGGATCAG 187 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| ||||| |||||||| | || ||| | ||||| | | ||||||||| Sbjct 188 CAGAGGCTTATCTTTGCTGGAAAACAGCTCGAAGATGGCCGAACTCTGGCCGATTATAAT 247 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | ||| | || ||||||| | || ||||| Sbjct 248 ATTCAGAAGGAATCCACCCTTCATCTTGTCCTACGTTTGAGGGGAGGTAT 297 >seq56145 Length=1576 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| |||| || || || || ||| | ||| | || Sbjct 750 ATGCAGATTTTTGTCAAGACTTTAACGGGTAAGACAATTACTTTGGAGGTGGAGAGTTCG 691 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | ||| || ||||| ||||| ||||| ||||||||||||||| Sbjct 690 GATACTATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAAGGGATACCACCTGATCAA 631 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || |||||| | || ||| | || || | | ||||||||| Sbjct 630 CAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGCACTCTTGCTGATTATAAT 571 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| || ||||| || Sbjct 570 ATTCAGAAGGAATCTAC 554 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || ||||| || ||||| || || | ||| ||||| | Sbjct 978 ATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACCATCACACTGGAGGTTGAATCCTCG 919 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || ||| || || || |||||||| || || || |||||| Sbjct 918 GACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCGGATCAA 859 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| ||||| ||| | ||||| | |||| | | ||||||||| Sbjct 858 CAGCGATTGATCTTTGCGGGAAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAAT 799 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || || ||||| || ||| | ||||||||| Sbjct 798 ATCCAGAAAGAGTCTACTCTCCATTTGGTT 769 >seq56144 Length=1637 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| |||| || || || || ||| | ||| | || Sbjct 750 ATGCAGATTTTTGTCAAGACTTTAACGGGTAAGACAATTACTTTGGAGGTGGAGAGTTCG 691 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | ||| || ||||| ||||| ||||| ||||||||||||||| Sbjct 690 GATACTATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAAGGGATACCACCTGATCAA 631 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || |||||| | || ||| | || || | | ||||||||| Sbjct 630 CAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGCACTCTTGCTGATTATAAT 571 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| || ||||| || Sbjct 570 ATTCAGAAGGAATCTAC 554 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || ||||| || ||||| || || | ||| ||||| | Sbjct 978 ATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACCATCACACTGGAGGTTGAATCCTCG 919 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || ||| || || || |||||||| || || || |||||| Sbjct 918 GACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCGGATCAA 859 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| ||||| ||| | ||||| | |||| | | ||||||||| Sbjct 858 CAGCGATTGATCTTTGCGGGAAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAAT 799 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || || ||||| || ||| | ||||||||| Sbjct 798 ATCCAGAAAGAGTCTACTCTCCATTTGGTT 769 >seq56143 Length=1408 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| |||| || || || || ||| | ||| | || Sbjct 750 ATGCAGATTTTTGTCAAGACTTTAACGGGTAAGACAATTACTTTGGAGGTGGAGAGTTCG 691 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | ||| || ||||| ||||| ||||| ||||||||||||||| Sbjct 690 GATACTATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAAGGGATACCACCTGATCAA 631 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || |||||| | || ||| | || || | | ||||||||| Sbjct 630 CAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGCACTCTTGCTGATTATAAT 571 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| || ||||| || Sbjct 570 ATTCAGAAGGAATCTAC 554 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || ||||| || ||||| || || | ||| ||||| | Sbjct 978 ATGCAAATCTTCGTCAAAACGCTAACTGGAAAAACCATCACACTGGAGGTTGAATCCTCG 919 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || ||| || || || |||||||| || || || |||||| Sbjct 918 GACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCGGATCAA 859 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| ||||| ||| | ||||| | |||| | | ||||||||| Sbjct 858 CAGCGATTGATCTTTGCGGGAAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAAT 799 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || || ||||| || ||| | ||||||||| Sbjct 798 ATCCAGAAAGAGTCTACTCTCCATTTGGTT 769 >seq60039 Length=228 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || ||||| || ||||| || || || || |||||| | |||||||| |||||| Sbjct 19 AAGATACAGGATAAGGAGGGTATTCCCCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAA 78 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || ||| | ||||| || | ||||||||||| || || ||||| || | ||| Sbjct 79 CAACTCGAAGATGGACGAACCTTGGCTGATTATAATATCCAGAAGGAATCCACCCTTCAT 138 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | || | ||||| | || ||||| Sbjct 139 CTCGTCCTTCGTTTGAGGGGAGGTAT 164 >seq62831 Length=874 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 124632 GATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAG 124691 || || |||||||| || ||||| || || ||| | |||||||| || || || | || Sbjct 2 GACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCCGGTAAGCAGCTGGAA 61 Query 124692 GATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||| |||| || | | |||||||| ||||||||||||||||| | || ||||| Sbjct 62 GATGGTCGCACTCTTGCTGATTATAACATTCAAAAAGAATCAACGCTTCACTTGGT 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754750980131200