Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq15741 100 5e-16 seq15740 100 5e-16 seq15739 100 5e-16 seq15738 100 5e-16 >seq15741 Length=1262 Score = 100 bits (110), Expect = 5e-16 Identities = 176/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 135595 TATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATA 135654 ||||| || || || || ||| ||| ||||| ||| || |||| || | || || Sbjct 718 TATACCGACAATGATGAATGGTCTAGTTGGAAGAAACTAGGCGATAGCGTGCTTCACATT 659 Query 135655 GAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGCA 135714 || ||| | | |||||| ||| | | | || || || ||| ||||||| || | | Sbjct 658 GAGCTTCGCAAATGGGCTGATATCATGGTCATTGCTCCATTATCGGCAAACACTCTTGGC 599 Query 135715 AAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGA-TAC 135773 || || ||| || | || || ||| ||||||| | |||||| ||||||||||| ||| Sbjct 598 AAGATTGCTGGAGGGTTGTGTGACAATCTACTGACATGTATTGTGAGAGCCTGGGACTAC 539 Query 135774 AAACAAACCACTCATTTTCTG-TCCTGCAATGAATACTCTTATGTGGGAACATCCTATTA 135832 | ||| ||| | |||| || ||||| ||||| ||| |||||||| | ||||| | | Sbjct 538 -AGCAAGCCA-TTATTTGTTGCACCTGCCATGAACACTTTTATGTGGAACAATCCTTTCA 481 Query 135833 CAGAAAAACAT 135843 |||| || ||| Sbjct 480 CAGAGAAGCAT 470 >seq15740 Length=1172 Score = 100 bits (110), Expect = 5e-16 Identities = 176/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 135595 TATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATA 135654 ||||| || || || || ||| ||| ||||| ||| || |||| || | || || Sbjct 718 TATACCGACAATGATGAATGGTCTAGTTGGAAGAAACTAGGCGATAGCGTGCTTCACATT 659 Query 135655 GAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGCA 135714 || ||| | | |||||| ||| | | | || || || ||| ||||||| || | | Sbjct 658 GAGCTTCGCAAATGGGCTGATATCATGGTCATTGCTCCATTATCGGCAAACACTCTTGGC 599 Query 135715 AAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGA-TAC 135773 || || ||| || | || || ||| ||||||| | |||||| ||||||||||| ||| Sbjct 598 AAGATTGCTGGAGGGTTGTGTGACAATCTACTGACATGTATTGTGAGAGCCTGGGACTAC 539 Query 135774 AAACAAACCACTCATTTTCTG-TCCTGCAATGAATACTCTTATGTGGGAACATCCTATTA 135832 | ||| ||| | |||| || ||||| ||||| ||| |||||||| | ||||| | | Sbjct 538 -AGCAAGCCA-TTATTTGTTGCACCTGCCATGAACACTTTTATGTGGAACAATCCTTTCA 481 Query 135833 CAGAAAAACAT 135843 |||| || ||| Sbjct 480 CAGAGAAGCAT 470 >seq15739 Length=1227 Score = 100 bits (110), Expect = 5e-16 Identities = 176/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 135595 TATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATA 135654 ||||| || || || || ||| ||| ||||| ||| || |||| || | || || Sbjct 718 TATACCGACAATGATGAATGGTCTAGTTGGAAGAAACTAGGCGATAGCGTGCTTCACATT 659 Query 135655 GAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGCA 135714 || ||| | | |||||| ||| | | | || || || ||| ||||||| || | | Sbjct 658 GAGCTTCGCAAATGGGCTGATATCATGGTCATTGCTCCATTATCGGCAAACACTCTTGGC 599 Query 135715 AAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGA-TAC 135773 || || ||| || | || || ||| ||||||| | |||||| ||||||||||| ||| Sbjct 598 AAGATTGCTGGAGGGTTGTGTGACAATCTACTGACATGTATTGTGAGAGCCTGGGACTAC 539 Query 135774 AAACAAACCACTCATTTTCTG-TCCTGCAATGAATACTCTTATGTGGGAACATCCTATTA 135832 | ||| ||| | |||| || ||||| ||||| ||| |||||||| | ||||| | | Sbjct 538 -AGCAAGCCA-TTATTTGTTGCACCTGCCATGAACACTTTTATGTGGAACAATCCTTTCA 481 Query 135833 CAGAAAAACAT 135843 |||| || ||| Sbjct 480 CAGAGAAGCAT 470 >seq15738 Length=1310 Score = 100 bits (110), Expect = 5e-16 Identities = 176/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 135595 TATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATA 135654 ||||| || || || || ||| ||| ||||| ||| || |||| || | || || Sbjct 718 TATACCGACAATGATGAATGGTCTAGTTGGAAGAAACTAGGCGATAGCGTGCTTCACATT 659 Query 135655 GAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGCA 135714 || ||| | | |||||| ||| | | | || || || ||| ||||||| || | | Sbjct 658 GAGCTTCGCAAATGGGCTGATATCATGGTCATTGCTCCATTATCGGCAAACACTCTTGGC 599 Query 135715 AAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGA-TAC 135773 || || ||| || | || || ||| ||||||| | |||||| ||||||||||| ||| Sbjct 598 AAGATTGCTGGAGGGTTGTGTGACAATCTACTGACATGTATTGTGAGAGCCTGGGACTAC 539 Query 135774 AAACAAACCACTCATTTTCTG-TCCTGCAATGAATACTCTTATGTGGGAACATCCTATTA 135832 | ||| ||| | |||| || ||||| ||||| ||| |||||||| | ||||| | | Sbjct 538 -AGCAAGCCA-TTATTTGTTGCACCTGCCATGAACACTTTTATGTGGAACAATCCTTTCA 481 Query 135833 CAGAAAAACAT 135843 |||| || ||| Sbjct 480 CAGAGAAGCAT 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922335238126360