Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq33732 104 3e-17 seq56144 87.8 2e-12 seq56143 87.8 2e-12 seq56145 84.2 2e-11 >seq33732 Length=802 Score = 104 bits (114), Expect = 3e-17 Identities = 159/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| ||||| | ||| ||||| || || ||||||||||| || || ||| | Sbjct 466 ACGGAGCACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCAAGGGTACGCCC 407 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || ||||| ||||||||||| || ||||| |||||||| || | || | | |||||| Sbjct 406 ATCCTCTAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGAGGGATCCCCTCCTT 347 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || | ||| | || | | | | | | | | || || ||| || || || | | Sbjct 346 GT-CTTGAATCTTGGACTTAACATTGTCTATGGTATCTGAACTC---TCAACTTCAAGAG 291 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||| ||||| || || ||||| |||||||||||||| || Sbjct 290 TGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATCTT 248 >seq56144 Length=1637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || || || || |||| || | ||| || || || || Sbjct 1016 TCCTTCTGTATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCCAACTGTTTTCCGGCAAAG 1075 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||| |||| || | | ||||||||| ||| | || | || ||| Sbjct 1076 ATCAACCGCTGCTGATCGGGAGGAATTCCCTCCTTGTCT-TGAATCTTAGCTTTCACGTT 1134 Query 43113 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| ||||| || || | || |||||||| || ||||| || || || Sbjct 1135 GTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATGGTTTTACCGGTTAGGGTTTTCAC 1194 Query 43172 AAAGATTTGCAT 43183 |||||||||||| Sbjct 1195 AAAGATTTGCAT 1206 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || ||| || || ||||| ||||| || ||||| | | |||| || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || || || || | |||||| || || | || | | || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 43095 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || || | ||| | | | ||||| ||||| || || | ||||||||||| Sbjct 890 ATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || ||||||||||| Sbjct 949 TCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 >seq56143 Length=1408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || ||| || || ||||| ||||| || ||||| | | |||| || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || || || || | |||||| || || | || | | || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 43095 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || || | ||| | | | ||||| ||||| || || | ||||||||||| Sbjct 890 ATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || || ||||||||||| Sbjct 949 TCCAGTTAGCGTTTTGACGAAGATTTGCAT 978 >seq56145 Length=1576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || ||| || || ||||| ||||| || ||||| | | |||| || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || || || || | |||||| || || | || | | || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 43095 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || || | ||| | | | ||||| ||||| || || | ||||||||||| Sbjct 890 ATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || ||||||||||| Sbjct 949 TCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571283958372520