Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq56144 125 5e-24 seq53415 100 2e-16 seq2804 91.5 1e-13 seq33732 82.4 5e-11 >seq56144 Length=1637 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || |||||||| | || ||| ||||||||||||||||||| Sbjct 980 CCGCCGCGGAGACGGAGTACCAGGTGGAGCGTTGATTCCTTCTGTATGTTGTAGTCGGCT 1039 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||||||| || || || || || | ||||||||| ||| || Sbjct 1040 AGGGTTCGGCCGTCTTCCAACTGTTTTCCGGCAAAGATCAACCGCTGCTGATCGGGAGGA 1099 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||| || ||||| | | | | || | |||| ||||| || Sbjct 1100 ATTCCCTCCTTGTCTTGAATC-TTAGCTTTCACGTTGTCGATGGTGTCGGAGGATTCAAC 1158 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || |||||||| ||||| || |||||||||||||| ||||| Sbjct 1159 CTCTAGGGTTATGGTTTTACCGGTTAGGGTTTTCACAAAGATTTGCAT 1206 >seq53415 Length=940 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || || || | ||| || ||||| ||||||||||||| Sbjct 381 CCACCGCGGAGACGGAGGACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCG 322 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| ||||||||||| || ||||| ||||| |||||||| || || Sbjct 321 AGAGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGATCTGGAGGA 262 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| || || || Sbjct 261 ATCCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGGAAGACTCAACC 202 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || || || || || || || |||||||| |||||||||||| Sbjct 201 TCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 154 >seq2804 Length=712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| ||| |||||||||||||| || | || |||| | || Sbjct 468 AGCACCAAATGGAGTGTAGATTCCTTCTGTATGTTGTAATCAGCAAGGGTACGGCCATCC 409 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 || | || ||||| || |||||||| ||||||||||| | ||| | || |||||||| Sbjct 408 TCTAGTTGTTTGCCGGCAAAAATGAGACGCTGCTGGTCAGGTGGGATCCCT-TCCTTGTC 350 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | |||| | ||| | || || || | |||||||| Sbjct 349 TTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGT 290 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| || || || || || |||||| Sbjct 289 CTTGCCAGTGAGGGTCTTAACGAAAATTTGCATC 256 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG-- 34220 || || || || | || ||| || || | ||| |||||||| |||||||| || | Sbjct 711 CCACCACGAAGACGCAACACAAGATGGAGAGTTGACTCTTTCTGAATGTTGTAATCTGCT 652 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 | || | | | | || || | ||| ||||| || || || |||| ||| |||||| | Sbjct 651 AAAGTT--CTGCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGTTGGTCGGGTG 594 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG 34339 | | || ||| || || ||||| ||||| | || | | || | ||| | ||| Sbjct 593 GAATGCCCTCTTTATCCTGAATCTTG-GCTTTGACATTGTCAATGGTATCAGAGCTCTCG 535 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || | |||||||| || || |||||||||||||||||||| |||||| Sbjct 534 ACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTCACAAAGATTTGCATC 484 >seq33732 Length=802 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| || | || ||| | || || | ||||| || || || Sbjct 442 TTCCTTCTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTCTAGTTGCTTACCAGCAAA 383 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 |||||| |||||||| || || | | ||||||||| ||||| ||| | || Sbjct 382 AATGAGACGCTGCTGATCTGGAGGGATCCCCTCCTTGTCTTGAATCTTGGACTTAACATT 323 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| | ||| | || || || | |||||||| ||||| || || || ||||| Sbjct 322 GTCTATGGTATCTGAACTCTCAACTTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCAC 263 Query 34378 AAAGATCTGCATC 34390 |||||| |||||| Sbjct 262 AAAGATTTGCATC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322778034667040