Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq46009 190 2e-43 seq25475 122 8e-23 seq25477 91.5 1e-13 >seq46009 Length=1074 Score = 190 bits (210), Expect = 2e-43 Identities = 587/898 (65%), Gaps = 29/898 (3%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| || || || ||||| |||| ||| || | ||||| || || | |||| Sbjct 901 TTGACATCACAGATGCCTTCTGATAATCACCAACCCTTCTCTCAAAAAAGTTGGCCTTTC 842 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC 16046 ||| | |||||| ||||| ||||||| ||||||| || | ||| || Sbjct 841 CTTGCAGAGAAATAAACTCCATCCAATCAAAGGGATTTTCCACTTCGTAATTTTTTGTGC 782 Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 | ||||| | ||||| || || || ||||||| ||| ||||| |||| | | Sbjct 781 AACCCAAGGAAACCAATAGCCTGTCAGCAACAAATTTTATGTACTGGCTCATAAGCTTTG 722 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAA 16166 ||||||| || || || | ||||| ||| || | ||| | | || || | || Sbjct 721 AGTTCATGCCAATCAAAGCACAAGGGAGTGCATCACAGACAAACTCGGTCTCAATTTCAA 662 Query 16167 CCGCTTC------AATGATTAT--ATCTCTTACTACACTATTTAACGGAGGGTTTAATAA 16218 | ||||| ||| ||||| | | | || ||| | | || ||| || Sbjct 661 CAGCTTCGTGTACAAT-ATTATGAACCCGCTCGTAGTCTAGCTTTCTCAG----TAACAA 607 Query 16219 G-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACT 16277 | ||| || || |||||||||||||| || | || ||||| ||| |||| | Sbjct 606 GCTGTATAGC----ATGCAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTT 551 Query 16278 CGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAA 16337 | ||||| ||||| ||||||||||||||||||| ||||||| ||| ||||| |||| Sbjct 550 CATTTGAGAATGTCAGACCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATAT---GGCAC 494 Query 16338 ATGAA----CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCG 16393 | ||| || || || ||||| |||||||| ||||| |||| || | ||| ||| Sbjct 493 A-GAAGCTTCCTGAGAAAAATATCCCTTCAACACATGCAAAACCAAC-AAGC-CTCTCCG 437 Query 16394 TACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAG 16453 | | | | ||| | ||||| | ||||| | || || | |||||| Sbjct 436 CAAATGA-AGTGGAACTGTTAATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAA 378 Query 16454 TTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTA 16513 | || || |||||||| || || | || || || |||| |||||| || Sbjct 377 GGAAGATTTTCAATTGCATTGAACAATTTATGCTTCTCGACTGAATCTTTAATATATGTC 318 Query 16514 TCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAA 16573 || | || ||||||||||| || |||||||||||||| |||||||||||||| || || Sbjct 317 TCCAACAGCAAACTATACATCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAG 258 Query 16574 AAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTA 16633 || | ||| || | ||||| || ||| ||||||| | || || || || | Sbjct 257 AATGCCCGAGCCTCCGGGATTTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAA 198 Query 16634 ACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA 16693 || |||||||| | ||||||||| ||||| | |||| || || | || ||| Sbjct 197 ACGATTCCATCAGATGTTGCAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAG 138 Query 16694 TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAA 16753 ||||| | || ||| | | | ||| | || | ||| || ||||| | ||||| Sbjct 137 TCTGACAAGGTTGCCCAATGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAG 78 Query 16754 AAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 ||| || |||||||||| ||||| | ||| | | || ||| ||| ||||||| Sbjct 77 AAACTGGCTTCAGCCTTTTTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAACA 20 >seq25475 Length=2349 Score = 122 bits (134), Expect = 8e-23 Identities = 251/371 (68%), Gaps = 7/371 (2%) Strand=Plus/Plus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 |||||| ||||| ||||| | |||||||| | || | |||||||||||| || | Sbjct 1532 ACAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTTAA 1591 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 |||||||||| || |||||||| | ||| || || || || ||| ||||| || Sbjct 1592 TCCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAAAA 1651 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 |||||||||||| |||||||| || | | |||| || | | ||| || Sbjct 1652 TATACCTTCAACGCAAGCAAATGCTACAATCCTCTCAGCGAA---TGTATCAGACGAATC 1708 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||||||| | ||||| | || |||| || ||| || |||| || || | Sbjct 1709 GATCCATTTCATCGCCCATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCGCGTG 1768 Query 16474 AAATAAATAAtttttttCTTTGCT--ATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 ||| ||| | || |||| |||| |||| ||||| | || | || | | |||| Sbjct 1769 AAACAAACGA--TTCTTCTCTGCTGAATCTTTGATATACGCCTCGAGGAGAAGAGAATAC 1826 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 || |||||||| |||||||| ||||| ||||| || || || ||| | || || || Sbjct 1827 ATCTCTGAATGGATATTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCTGAG 1886 Query 16592 ATTTGTACTTC 16602 ||||| | ||| Sbjct 1887 ATTTGGATTTC 1897 >seq25477 Length=343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 15949 ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCAT 16008 ||| || | ||| | ||| |||||||| || ||||| |||| | ||| || ||||| Sbjct 343 ATACTCTCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCTTGAAGTGATATCAACTCCAT 284 Query 16009 AAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCT 16068 ||||||||||||| | | | |||| ||| | || || | ||| |||| ||||| Sbjct 283 CCAATCAAAAGGATTCTCAGCATTATAGACTTTCCCACACCCAACTTCACACAACAATCT 224 Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCC 16116 ||| || ||||| || ||||||| ||||||| || | |||||| || Sbjct 223 ATCTGCAACAAACTCAATATACTTACTCATTAACTCTCCGTTCATCCC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462080366457400