Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq46009 145 7e-30 seq25475 111 2e-19 seq25477 87.8 2e-12 >seq46009 Length=1074 Score = 145 bits (160), Expect = 7e-30 Identities = 382/578 (66%), Gaps = 9/578 (2%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||||||||| ||||| ||||| |||||| || ||||| ||||| ||||| | Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 |||||||| | ||||| ||||| | ||| ||||| ||| ||| ||| || || ||| Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAAT 474 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 || || ||||| ||||| | | | | || |||| || | |||| Sbjct 473 ATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTT---A 417 Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 ||||| | |||||||||| || || || | || | ||||||| ||||| Sbjct 416 ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATTG 357 Query 14444 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 || || | | |||||| | | | ||| ||||| || | || || |||||||| Sbjct 356 AACAATTTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATACATC 297 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 ||||| || || || || || ||||||||||| || || || | ||| || | | Sbjct 296 TCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGATT 237 Query 14564 TGTACCTC--TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 || || || | || ||| ||| | |||||||| || ||| || |||||| | || Sbjct 236 TGAACGTCATTCAG--AAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTTG 179 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT-TGCTGAGTTTTTTCCAA 14680 ||||||| || | | || | || |||| | ||| | || || || |||| Sbjct 178 CAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAAG-GTTGCCCAA 120 Query 14681 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTT 14740 | || ||| | || ||||||||||| || | ||||| ||||| || |||| ||| Sbjct 119 TGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTT 60 Query 14741 TTATACATTACCCATATTTCTTTATATAATATAGGAAA 14778 || ||||| |||| | || ||| ||| || ||||| Sbjct 59 TTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAA 22 >seq25475 Length=2349 Score = 111 bits (122), Expect = 2e-19 Identities = 185/264 (70%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 ||||| || ||||| |||||||| || || || | |||||| ||||||||||| ||| Sbjct 1530 AAACAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTT 1589 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||||||||| || || |||||||| | ||| || || ||| ||| || ||||| Sbjct 1590 AATCCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAA 1649 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 ||||| || ||||| |||||| |||| |||| ||| | ||| | | | | Sbjct 1650 AATATACCTTCAACGCAAGCAAATGCTA-CAATC---CTCTCAGCGA--ATGTATCAGAC 1703 Query 14381 GA---TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437 || |||||||| | |||||||| | ||||| |||| | || || ||||| Sbjct 1704 GAATCGATCCATTTCATCGCCCATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATC 1763 Query 14438 GCATTAAATAAATGTTCCTTCTCT 14461 || | ||| ||| | | ||||||| Sbjct 1764 GCGTGAAACAAACGATTCTTCTCT 1787 >seq25477 Length=343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 13918 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13977 ||| || | ||| | || ||||||||||||||||| |||| |||||||| ||||| Sbjct 343 ATACTCTCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCTTGAAGTGATATCAACTCCAT 284 Query 13978 AAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCT 14037 ||||||| ||||| | || | ||||| |||| || | ||| | | ||||| Sbjct 283 CCAATCAAAAGGATTCTCAGCATTATAGACTTTCCCACACCCAACTTCACACAACAATCT 224 Query 14038 ATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACC 14085 ||| |||| ||||||||||| | | |||||| || | ||||| || Sbjct 223 ATCTGCAACAAACTCAATATACTTACTCATTAACTCTCCGTTCATCCC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481895456998120