Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq17518 223 4e-53 seq17517 223 4e-53 seq46009 185 1e-41 seq25475 140 4e-28 seq25476 102 1e-16 >seq17518 Length=2997 Score = 223 bits (246), Expect = 4e-53 Identities = 648/983 (66%), Gaps = 16/983 (2%) Strand=Plus/Minus Query 62916 CGCCC--ATCTATTACAAA-CATGTTCAATGCAACAGATGCCAGATTACACACGGCTACC 62972 ||||| |||| ||||| | | || | ||||||| ||||| || ||||||||||| | Sbjct 1647 CGCCCTTATCTCTTACATATCGTGGT-AATGCAATTGATGCAAGGTTACACACGGCAGTC 1589 Query 62973 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 63032 || | | | | || | |||||||||||||| || || |||| || || || Sbjct 1588 TCTGTTGGACTTGTGTACTCAATTATCTCAGTGCACAGGTTTGATGACTTAATTGTGCCA 1529 Query 63033 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63092 | |||||| || || || || | || || ||||||||| |||| ||| | ||| | ||| Sbjct 1528 AGATTTTGCTGGTTGCTTTTCCTATTGCAAGCATCCTTAAAAAGCATGTAAGGATTTCCA 1469 Query 63093 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT--T 63150 ||||| ||||| || | | ||| || ||||| |||| ||| | | | | Sbjct 1468 GTTTCTATCTGTGACTTCAAAATTGCAAACCAGA-GACTTTGTGCTTGAACAACCTTCTT 1410 Query 63151 TGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63210 || | ||| ||||||| || | || |||| || | || || |||||| || Sbjct 1409 TGCTTTTCCAG-CTCTTTCATACTGGGTGTACAGATTCTCATATTCTTCACCCCAA-CAG 1352 Query 63211 TGT-CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--A 63267 | | |||| | ||| |||| || || | || ||||| || || | | || | | Sbjct 1351 TCTGCCAAACCAGGGGCCTCATTGGGGCAAAACAGGGACCAATCACCAT--TGCTCCGAA 1294 Query 63268 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTT 63327 ||| || |||||| |||||||| | |||||| || ||||| ||||| | | |||| Sbjct 1293 CTCTTTCCATAAAAAGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTT 1234 Query 63328 CCTCGTTTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 | || ||||| || || |||| || || | ||| | | | ||||| |||||| ||| Sbjct 1233 CTTCCTTTCCGTGGTTTATTTTCAAC-TCCAAGAATTCAAATACATCAGCATGCCATGGT 1175 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 |||||||||| || | | | || | ||| |||||||||||| | |||| || Sbjct 1174 TCCAAGTATACAGCAAAAGCACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCA 1115 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 |||| ||| | || | || ||||||||| ||||| || || | ||||| || || Sbjct 1114 GTGTCATTGAACACACGCAGCATTGGAATGATACCATTAGACGTCCCATTTGTTCCACGA 1055 Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63566 || |||| ||| || | || ||| || || | ||| || || || || |||| Sbjct 1054 ATGTAGCTGCCATATGCCCTTATGTTATGAACAGAAACACCAATCCCTCCAGCAGATTTA 995 Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 || | ||||| ||| || || ||||| || ||||| || |||||||| |||| Sbjct 994 CTAATGACAGCGCACTCTTTCAATGTATCATAAATCCCTTCAATACTATCATCTTTCATA 935 Query 63627 TTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGA 63686 | | || || ||| || || | | || ||| || ||||| || | || ||| Sbjct 934 CATATCAAGAAGCAACTACTCAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGA 875 Query 63687 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 63746 ||||| || || |||||| | | ||| | | || || |||| || ||| || || ||| Sbjct 874 GAAGCATGAGTGAACCATCTCTGAGACATCAAATGATAAGTCTTAACAGCGGATTCAATA 815 Query 63747 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATT 63806 || | ||||| || || | || | ||||| ||| || ||||| |||||||||| Sbjct 814 TCATGCTTGTGAATCCCAACAGAAACCCTCATTATCATATGTTGAGGCCTTTCAACAACA 755 Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 | | | |||||||| || || | || | ||||| || ||||| || | || Sbjct 754 GTCCCATCAACTTTCAACAGATAAGACCTCTCAAGGGTTTTGAATCCAAAGTAATCATAG 695 Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889 ||| || || || ||||| || Sbjct 694 TCAAAATCCCGGTCATAAATTAT 672 >seq17517 Length=2996 Score = 223 bits (246), Expect = 4e-53 Identities = 648/983 (66%), Gaps = 16/983 (2%) Strand=Plus/Minus Query 62916 CGCCC--ATCTATTACAAA-CATGTTCAATGCAACAGATGCCAGATTACACACGGCTACC 62972 ||||| |||| ||||| | | || | ||||||| ||||| || ||||||||||| | Sbjct 1646 CGCCCTTATCTCTTACATATCGTGGT-AATGCAATTGATGCAAGGTTACACACGGCAGTC 1588 Query 62973 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 63032 || | | | | || | |||||||||||||| || || |||| || || || Sbjct 1587 TCTGTTGGACTTGTGTACTCAATTATCTCAGTGCACAGGTTTGATGACTTAATTGTGCCA 1528 Query 63033 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63092 | |||||| || || || || | || || ||||||||| |||| ||| | ||| | ||| Sbjct 1527 AGATTTTGCTGGTTGCTTTTCCTATTGCAAGCATCCTTAAAAAGCATGTAAGGATTTCCA 1468 Query 63093 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT--T 63150 ||||| ||||| || | | ||| || ||||| |||| ||| | | | | Sbjct 1467 GTTTCTATCTGTGACTTCAAAATTGCAAACCAGA-GACTTTGTGCTTGAACAACCTTCTT 1409 Query 63151 TGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63210 || | ||| ||||||| || | || |||| || | || || |||||| || Sbjct 1408 TGCTTTTCCAG-CTCTTTCATACTGGGTGTACAGATTCTCATATTCTTCACCCCAA-CAG 1351 Query 63211 TGT-CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--A 63267 | | |||| | ||| |||| || || | || ||||| || || | | || | | Sbjct 1350 TCTGCCAAACCAGGGGCCTCATTGGGGCAAAACAGGGACCAATCACCAT--TGCTCCGAA 1293 Query 63268 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTT 63327 ||| || |||||| |||||||| | |||||| || ||||| ||||| | | |||| Sbjct 1292 CTCTTTCCATAAAAAGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTT 1233 Query 63328 CCTCGTTTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 | || ||||| || || |||| || || | ||| | | | ||||| |||||| ||| Sbjct 1232 CTTCCTTTCCGTGGTTTATTTTCAAC-TCCAAGAATTCAAATACATCAGCATGCCATGGT 1174 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 |||||||||| || | | | || | ||| |||||||||||| | |||| || Sbjct 1173 TCCAAGTATACAGCAAAAGCACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCA 1114 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 |||| ||| | || | || ||||||||| ||||| || || | ||||| || || Sbjct 1113 GTGTCATTGAACACACGCAGCATTGGAATGATACCATTAGACGTCCCATTTGTTCCACGA 1054 Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63566 || |||| ||| || | || ||| || || | ||| || || || || |||| Sbjct 1053 ATGTAGCTGCCATATGCCCTTATGTTATGAACAGAAACACCAATCCCTCCAGCAGATTTA 994 Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 || | ||||| ||| || || ||||| || ||||| || |||||||| |||| Sbjct 993 CTAATGACAGCGCACTCTTTCAATGTATCATAAATCCCTTCAATACTATCATCTTTCATA 934 Query 63627 TTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGA 63686 | | || || ||| || || | | || ||| || ||||| || | || ||| Sbjct 933 CATATCAAGAAGCAACTACTCAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGA 874 Query 63687 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 63746 ||||| || || |||||| | | ||| | | || || |||| || ||| || || ||| Sbjct 873 GAAGCATGAGTGAACCATCTCTGAGACATCAAATGATAAGTCTTAACAGCGGATTCAATA 814 Query 63747 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATT 63806 || | ||||| || || | || | ||||| ||| || ||||| |||||||||| Sbjct 813 TCATGCTTGTGAATCCCAACAGAAACCCTCATTATCATATGTTGAGGCCTTTCAACAACA 754 Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 | | | |||||||| || || | || | ||||| || ||||| || | || Sbjct 753 GTCCCATCAACTTTCAACAGATAAGACCTCTCAAGGGTTTTGAATCCAAAGTAATCATAG 694 Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889 ||| || || || ||||| || Sbjct 693 TCAAAATCCCGGTCATAAATTAT 671 >seq46009 Length=1074 Score = 185 bits (204), Expect = 1e-41 Identities = 396/584 (68%), Gaps = 16/584 (3%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || ||||| ||||| ||||||||||||||| |||| ||| || || || || || Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || |||||||| || | |||||||||||| ||||||| | ||| ||| || || || Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAAT 474 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 33758 || ||||| || ||||| ||| ||| ||||| || || || |||| | Sbjct 473 ATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTTA--- 417 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| || |||||| || |||||||| | |||| || ||||| Sbjct 416 ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATTG 357 Query 33819 AAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 || | || | | ||| ||| |||||||| ||| || || | || | |||||||| Sbjct 356 AACA-AT-TTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATACA 299 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | || |||||||| || || || || |||||||| |||||||| | |||||| | | Sbjct 298 TCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGA 239 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 | || || || | ||| | | | || ||||| || || ||||||||| | || Sbjct 238 TTTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTTG 179 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTC---GTCTGGTGTTAGTTTATTCC 34053 ||||||| || | || ||| ||| || | || || ||||| || || || Sbjct 178 CAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTG--ACAAGGTT-GCCC 122 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 ||| || | ||| | || | ||| |||||||| | ||||| || || || |||| Sbjct 121 AATGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCT 62 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 |||| ||||| | ||||| | | ||| | ||||| || ||| Sbjct 61 TTTTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAACATA 18 >seq25475 Length=2349 Score = 140 bits (154), Expect = 4e-28 Identities = 387/588 (66%), Gaps = 18/588 (3%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 |||||| ||||||||||| || ||||| ||||| | ||| | ||||| ||||| || Sbjct 1529 CAAACAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGT 1588 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | ||| ||||||| || || ||||| ||||| || || | | ||| || ||||| Sbjct 1589 TAATCCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAA 1648 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC----ATAACCGGCGCTGT 33753 || || ||||| || |||||| || | || ||||| | || | | || Sbjct 1649 AAATATACCTTCAACGCAAGCAAATGCTACAATCCTCTCAGCGAATGTATCAGACG---- 1704 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 || ||||| || ||||| || ||||| || | ||| || ||||| || || | Sbjct 1705 AATCGATCCATTTCATCGCCCATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCG 1764 Query 33814 CATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACT 33871 | | ||| | | || || || | || |||||| | ||| | |||| | |||| Sbjct 1765 CGTGAAACAAACGATTCTTCTC--TGCTGAATCTTTGATATACGCCTCGAGGAGAAGAGA 1822 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 |||||| || ||||| || || || || || ||||| ||||||||||| | ||||| Sbjct 1823 ATACATCTCTGAATGGATATTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTC 1882 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 | || || | |||| | |||| | | || | ||| || || ||||| || Sbjct 1883 TGAGATTTGGATTTCTTTCATGAATCTTCCGGCGAGATTCTCCAAGACGATTCCGTCGGA 1942 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTTT 34048 ||| ||||| || || | ||||| | ||| | | |||| |||| || Sbjct 1943 GGCGGCAAAGAAGGCAAGGACATGCGAAACAAAGTGGCGCTCACCGTC-GGTG--AGGGA 1999 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 |||| | | | |||||| || | ||| |||||||| | ||||| || || || || Sbjct 2000 GATCCAGTGCTGGTTATCTTGGGAGAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTC 2059 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || || || ||||| | |||||| | | | |||||||||||||| || Sbjct 2060 GGCTTTCTTGTACATTTCCCAGATTTTAGGGTATTGGATTGGGAACAT 2107 >seq25476 Length=346 Score = 102 bits (112), Expect = 1e-16 Identities = 205/300 (68%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683 ||||| ||||| || | ||| ||||||| || |||||||||||||| || || | | | Sbjct 5 TCGTTTGAAAAAGTTAATCCAGGCATTAAACCGCGCTTTTTAAGCCAGAAAATTGCACAG 64 Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--AT 33741 || ||| || || || || ||||| || ||| || |||| | ||| || | || Sbjct 65 AAACTTCCAGAGAAAAATATACCTTCAACACAAGCGAAAGCAACGATTCTTTCAGCGAAT 124 Query 33742 -AACCGG-CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799 || ||| || || ||||| || ||||| || || ||||| | ||||| Sbjct 125 GAATCGGACGA----ATCGATCCATTTCAACGCCCATTCAGCTTTCTTAGCGATGCAAGG 180 Query 33800 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 33859 || || || ||||| | ||| | | || || || | |||| || | ||| || || Sbjct 181 AATTGTATCAATGGCGTGAAACAAACGATTCTTCTCGGTGTTATCGTTGATATACGTTTC 240 Query 33860 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 ||| | ||||||||||| || ||||| || || || || || ||||| || |||||||| Sbjct 241 GATAAGGAGACTATACATCTCGGAATGGATATTCTCGATCGCGATCTGGAAACCGTAGAA 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629229830597520