Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq46009 147 2e-30 seq17518 145 7e-30 seq17517 145 7e-30 seq25475 100 3e-16 >seq46009 Length=1074 Score = 147 bits (162), Expect = 2e-30 Identities = 365/553 (66%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||||||||| || | ||| ||||||||| ||||||||||| || ||||| | Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||| | ||||| ||||| | ||| ||||| ||| || || || || ||| Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAAT 474 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATC 11809 || || || ||| |||||| | || | || || || || || || ||| Sbjct 473 ATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTTAATC 414 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 || | ||||| ||||| ||| || || || | |||| || || || || Sbjct 413 CAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATTGAAC 354 Query 11870 AA---ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 || |||| || || | |||| | | |||||| || | | ||||||||||| Sbjct 353 AATTTATGC---TTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATACATC 297 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || ||||||||||| || || ||||| ||||| || ||||| || ||||| | Sbjct 296 TCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGATT 237 Query 11987 TGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA 12046 || || || ||| ||| | || |||||||| || || |||||| | |||| Sbjct 236 TGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTTGCA 177 Query 12047 AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCA 12106 ||||| || || | ||| ||| |||| || ||| | | || | |||||| | Sbjct 176 AAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAAGGTTGCCCAATGA 117 Query 12107 TCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTA 12166 | || ||| | || | |||||||||||| ||||||| ||||| || | | | ||| Sbjct 116 TGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTTTTG 57 Query 12167 TACATTTTCCAGA 12179 ||||| | ||||| Sbjct 56 TACATCTCCCAGA 44 >seq17518 Length=2997 Score = 145 bits (160), Expect = 7e-30 Identities = 354/533 (66%), Gaps = 10/533 (2%) Strand=Plus/Minus Query 38022 TTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTC 38081 ||||||||| | |||||| ||||| | ||| |||||||||| | | | |||||| Sbjct 1289 TTCCATAAAAAGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTC 1230 Query 38082 GTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTA- 38140 || || || || | || | || || |||| |||||| ||||||||||| | Sbjct 1229 CTTTCCGTGGTTTATTTTCAACTCCAAGAATTCAAATACATCAGCATGCCATGGTTCCAA 1170 Query 38141 -TATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTG 38199 |||| | | | | || ||| ||| || | |||||||||| || ||||| | ||| Sbjct 1169 GTATACAGCAAAA--GCACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGTG 1112 Query 38200 TTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATA 38259 | ||| | | | | ||| || | ||||||||||| | || ||| | || || Sbjct 1111 TCATTGAACACACGCAGCATTGGAATGATACCATTAGACGTCCCATTTGTTCCACGAATG 1052 Query 38260 TAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT 38319 || | || | || | ||| ||| | || | || || || || ||| ||| Sbjct 1051 TAGCTGCCATATGCCCTTATGTTATGAACAGAAACACCAATCCCTCCAGCAGATTTACTA 992 Query 38320 ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGT 38379 || | |||||| | ||| || |||||| | || ||||| ||||| ||||| || || | Sbjct 991 ATGACAGCGCACTCTTTCAATGTATCATAAATCCCTTCAATACTATCATCTTTCATACAT 932 Query 38380 AGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGAT 38439 | | || |||||| || |||||| ||||| ||||| || || | || ||||| Sbjct 931 ATCAAGAAGCAACTACTCAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGAGAA 872 Query 38440 GCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATC---ATCTATA 38496 ||||| |||||||| | | |||| ||| ||| || | | ||| | || ||| Sbjct 871 GCATGAGTGAACCATCTCTGAGACATCAAATGATAAGTCT---TAACAGCGGATTCAATA 815 Query 38497 TCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 ||| |||||| || | ||| |||||||||| ||||||||| || ||||| Sbjct 814 TCATGCTTGTGAATCCCAACAGAAACCCTCATTATCATATGTTGAGGCCTTTC 762 Score = 134 bits (148), Expect = 1e-26 Identities = 475/730 (65%), Gaps = 19/730 (3%) Strand=Plus/Minus Query 36902 TAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCA-CCTCTGTCG 36960 |||| ||||| || | ||| | | |||||| |||||||| | ||| |||| || Sbjct 2472 TAGGTTTATCCATGTGTATGTTTAAGCTTTGACTCTGATCTATGTA-GCATCCTCGATCA 2414 Query 36961 GCTGCCATTTCTAAAATACAT-TTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || | | | || ||||| ||||||||||| ||||||||||| ||| Sbjct 2413 ACGGCCATGTCAACCA-ATATCTTTTGCTTGATCTCCCAAACAGTTTTATATATGCCTTT 2355 Query 37020 TATATTATCTGGTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATT 37076 | | |||||| ||| | || ||| | || ||||| | | | ||| |||| Sbjct 2354 AAGTTCGGCTGGTATTTCTGTGAGATTTTGGACTGAGCCATTGTCATAGATAATCTTATT 2295 Query 37077 CTTTATGTCATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTT 37134 ||| | || |||||||| | | | || | | || | ||||| || Sbjct 2294 CTTAAGTGCAGGATTCCACAG--TCCCATTTCAGTCAAATCATGAAGAAGGTGCTTGTTC 2237 Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 || || ||| || ||| || ||||| | | || ||||| ||||||||||||| Sbjct 2236 ACTACAACAAACTCACCACTTAGAACTCTGCGATTGTAGATATTAGAAGTATATGGTTCA 2177 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 | |||||||||| | | |||||| ||||||||||||||||| || || | ||| Sbjct 2176 AAACACTCATTATTGCCAAGAATTTGACTAGTAGATGCAGTAGGCATAGGGGCAACAAGA 2117 Query 37255 AGGCTATTTCTCA-ATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313 || ||| | || | | || | | | || ||| | ||| || |||||||||| || Sbjct 2116 AGTGAATTACGCACACCTATCTTTGAT-ATCTTCTCCCTAAGTGCACTCCAATCCCACAA 2058 Query 37314 ATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATC 37373 | | ||| | |||||| ||| || ||||| || || || | ||| | | Sbjct 2057 TTTGGAGGGGGTAACACCCCACATGTCAGGCTGAAGAATTCCCTTGCTTACAGGACTACC 1998 Query 37374 GTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGC 37433 ||||| || ||||| | || | || ||| | ||| ||| || || ||| ||| Sbjct 1997 ATTATAGGTTTCATAGGTGCCTTCTTTTGCAGCCAATTCACAAGAAGTTTTTAGAGCGTG 1938 Query 37434 ATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC 37493 ||| ||||| ||||| ||||| | | ||||| || || ||| | ||| ||||| Sbjct 1937 ATAGTATATAGTTTCAAAAATGTCCTTGTTTAACTGTTGAGCCTCTGGGGAATCAAATGC 1878 Query 37494 ATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553 || | || |||||| |||||| | ||||||||| || ||||| |||||||| || Sbjct 1877 CATTCCTAGTAGTATAAAAGTATCAGCAAGACCCTGAACTCCAATACCAATGGGTCTGTG 1818 Query 37554 TTTCTTATTAGATCT---AGACGATTCTATCACTGGATAATAATTGATATCTATTATTTT 37610 | | | || || || | | ||| ||||| || || || | ||| |||||||| Sbjct 1817 TCGCATGTTTGACCTTTCTGCAGTTTC---AACTGGGTAGTAGTTCACATCAATTATTTT 1761 Query 37611 ATTTAGATTT 37620 ||| || ||| Sbjct 1760 ATTAAGGTTT 1751 >seq17517 Length=2996 Score = 145 bits (160), Expect = 7e-30 Identities = 354/533 (66%), Gaps = 10/533 (2%) Strand=Plus/Minus Query 38022 TTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTC 38081 ||||||||| | |||||| ||||| | ||| |||||||||| | | | |||||| Sbjct 1288 TTCCATAAAAAGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTC 1229 Query 38082 GTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTA- 38140 || || || || | || | || || |||| |||||| ||||||||||| | Sbjct 1228 CTTTCCGTGGTTTATTTTCAACTCCAAGAATTCAAATACATCAGCATGCCATGGTTCCAA 1169 Query 38141 -TATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTG 38199 |||| | | | | || ||| ||| || | |||||||||| || ||||| | ||| Sbjct 1168 GTATACAGCAAAA--GCACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGTG 1111 Query 38200 TTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATA 38259 | ||| | | | | ||| || | ||||||||||| | || ||| | || || Sbjct 1110 TCATTGAACACACGCAGCATTGGAATGATACCATTAGACGTCCCATTTGTTCCACGAATG 1051 Query 38260 TAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT 38319 || | || | || | ||| ||| | || | || || || || ||| ||| Sbjct 1050 TAGCTGCCATATGCCCTTATGTTATGAACAGAAACACCAATCCCTCCAGCAGATTTACTA 991 Query 38320 ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGT 38379 || | |||||| | ||| || |||||| | || ||||| ||||| ||||| || || | Sbjct 990 ATGACAGCGCACTCTTTCAATGTATCATAAATCCCTTCAATACTATCATCTTTCATACAT 931 Query 38380 AGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGAT 38439 | | || |||||| || |||||| ||||| ||||| || || | || ||||| Sbjct 930 ATCAAGAAGCAACTACTCAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGAGAA 871 Query 38440 GCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATC---ATCTATA 38496 ||||| |||||||| | | |||| ||| ||| || | | ||| | || ||| Sbjct 870 GCATGAGTGAACCATCTCTGAGACATCAAATGATAAGTCT---TAACAGCGGATTCAATA 814 Query 38497 TCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 ||| |||||| || | ||| |||||||||| ||||||||| || ||||| Sbjct 813 TCATGCTTGTGAATCCCAACAGAAACCCTCATTATCATATGTTGAGGCCTTTC 761 Score = 134 bits (148), Expect = 1e-26 Identities = 475/730 (65%), Gaps = 19/730 (3%) Strand=Plus/Minus Query 36902 TAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCA-CCTCTGTCG 36960 |||| ||||| || | ||| | | |||||| |||||||| | ||| |||| || Sbjct 2471 TAGGTTTATCCATGTGTATGTTTAAGCTTTGACTCTGATCTATGTA-GCATCCTCGATCA 2413 Query 36961 GCTGCCATTTCTAAAATACAT-TTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || | | | || ||||| ||||||||||| ||||||||||| ||| Sbjct 2412 ACGGCCATGTCAACCA-ATATCTTTTGCTTGATCTCCCAAACAGTTTTATATATGCCTTT 2354 Query 37020 TATATTATCTGGTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATT 37076 | | |||||| ||| | || ||| | || ||||| | | | ||| |||| Sbjct 2353 AAGTTCGGCTGGTATTTCTGTGAGATTTTGGACTGAGCCATTGTCATAGATAATCTTATT 2294 Query 37077 CTTTATGTCATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTT 37134 ||| | || |||||||| | | | || | | || | ||||| || Sbjct 2293 CTTAAGTGCAGGATTCCACAG--TCCCATTTCAGTCAAATCATGAAGAAGGTGCTTGTTC 2236 Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 || || ||| || ||| || ||||| | | || ||||| ||||||||||||| Sbjct 2235 ACTACAACAAACTCACCACTTAGAACTCTGCGATTGTAGATATTAGAAGTATATGGTTCA 2176 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 | |||||||||| | | |||||| ||||||||||||||||| || || | ||| Sbjct 2175 AAACACTCATTATTGCCAAGAATTTGACTAGTAGATGCAGTAGGCATAGGGGCAACAAGA 2116 Query 37255 AGGCTATTTCTCA-ATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313 || ||| | || | | || | | | || ||| | ||| || |||||||||| || Sbjct 2115 AGTGAATTACGCACACCTATCTTTGAT-ATCTTCTCCCTAAGTGCACTCCAATCCCACAA 2057 Query 37314 ATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATC 37373 | | ||| | |||||| ||| || ||||| || || || | ||| | | Sbjct 2056 TTTGGAGGGGGTAACACCCCACATGTCAGGCTGAAGAATTCCCTTGCTTACAGGACTACC 1997 Query 37374 GTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGC 37433 ||||| || ||||| | || | || ||| | ||| ||| || || ||| ||| Sbjct 1996 ATTATAGGTTTCATAGGTGCCTTCTTTTGCAGCCAATTCACAAGAAGTTTTTAGAGCGTG 1937 Query 37434 ATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC 37493 ||| ||||| ||||| ||||| | | ||||| || || ||| | ||| ||||| Sbjct 1936 ATAGTATATAGTTTCAAAAATGTCCTTGTTTAACTGTTGAGCCTCTGGGGAATCAAATGC 1877 Query 37494 ATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553 || | || |||||| |||||| | ||||||||| || ||||| |||||||| || Sbjct 1876 CATTCCTAGTAGTATAAAAGTATCAGCAAGACCCTGAACTCCAATACCAATGGGTCTGTG 1817 Query 37554 TTTCTTATTAGATCT---AGACGATTCTATCACTGGATAATAATTGATATCTATTATTTT 37610 | | | || || || | | ||| ||||| || || || | ||| |||||||| Sbjct 1816 TCGCATGTTTGACCTTTCTGCAGTTTC---AACTGGGTAGTAGTTCACATCAATTATTTT 1760 Query 37611 ATTTAGATTT 37620 ||| || ||| Sbjct 1759 ATTAAGGTTT 1750 >seq25475 Length=2349 Score = 100 bits (110), Expect = 3e-16 Identities = 239/358 (67%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| || ||||| ||||| | ||||||||| | || || || || ||||| ||| Sbjct 1530 AAACAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTT 1589 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || |||||||| | ||| || || ||| || ||| ||||| Sbjct 1590 AATCCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAA 1649 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC--ATATACCTTGTTGCTAG 11804 ||||| || || || ||||||||||| | || || | || || | | | | Sbjct 1650 AATATACCTTCAACGCAAGCAAATGCTACAATCCTCTCAGCGAATGTATC-AGACG-AAT 1707 Query 11805 ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864 |||||||| | ||||| || || || || | ||| || || || || |||| Sbjct 1708 CGATCCATTTCATCGCCCATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCGCGT 1767 Query 11865 TAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 ||| ||| | | || ||| |||| | | ||| | || | | | | ||||| Sbjct 1768 GAAACAAACGATTCTTCTCTGCTGAATCTTTGATATACGCCTCGAGGAGAAGAGAATACA 1827 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 | |||||||| ||||| || || || || || ||||| ||||| || |||||||| Sbjct 1828 TCTCTGAATGGATATTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCTGA 1885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468087555086960