Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq17518 241 2e-58 seq17517 241 2e-58 seq46009 181 1e-40 seq25476 89.7 7e-13 >seq17518 Length=2997 Score = 241 bits (266), Expect = 2e-58 Identities = 654/985 (66%), Gaps = 26/985 (3%) Strand=Plus/Minus Query 65711 CTCATCTATTACAAA-CATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 65769 || |||| ||||| | | || | ||||||| ||||| || ||||| ||||| ||| Sbjct 1643 CTTATCTCTTACATATCGTGGT-AATGCAATTGATGCAAGGTTACACACGGCAGTCTCTG 1585 Query 65770 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 65829 | | | | || | |||||||||||||| || || |||| || || || | || Sbjct 1584 TTGGACTTGTGTACTCAATTATCTCAGTGCACAGGTTTGATGACTTAATTGTGCCAAGAT 1525 Query 65830 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 65889 |||| || || || || | || || ||||||||| |||| ||| | ||| | ||||||| Sbjct 1524 TTTGCTGGTTGCTTTTCCTATTGCAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTT 1465 Query 65890 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 65949 | ||||| || | | ||| || ||||| |||| ||| | | | || | | Sbjct 1464 CTATCTGTGACTTCAAAATTGCAAACCAGA-GACTTTGTGCTTGA--ACAACCTTCTTTG 1408 Query 65950 TCTTTTC----TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 66005 |||||| |||||| || | || |||| || | || || |||||| || | Sbjct 1407 -CTTTTCCAGCTCTTTCATACTGGGTGTACAGATTCTCATATTCTTCACCCCAA-CAGTC 1350 Query 66006 T-CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACT 66062 | |||| ||||| |||| || || | || ||||| || || | | || | ||| Sbjct 1349 TGCCAAACCAGGGGCCTCATTGGGGCAAAACAGGGACCAATCACCAT--TGCTCCGAACT 1292 Query 66063 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCC 66122 | || |||||| |||||||| | |||||| || ||||||||||| | | ||||| Sbjct 1291 CTTTCCATAAAAAGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCT 1232 Query 66123 TCGTTTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTC 66181 || ||||| || || |||| || || | ||| | | | |||| |||||| ||||| Sbjct 1231 TCCTTTCCGTGGTTTATTTTCAAC-TCCAAGAATTCAAATACATCAGCATGCCATGGTTC 1173 Query 66182 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 66241 |||||||| || | | | || | ||| |||||||||||| | |||| || || Sbjct 1172 CAAGTATACAGCAAAAGCACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGT 1113 Query 66242 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGAT 66301 || ||| | || | || ||||||||| |||||||| || || ||||| || || || Sbjct 1112 GTCATTGAACACACGCAGCATTGGAATGATACCATTAGACGTCCCATTTGTTCCACGAAT 1053 Query 66302 ATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 66361 ||||| ||| ||| | || ||| || || | ||| || || || || |||| Sbjct 1052 GTAGCTGCCATATGCCCTTATGTTATGAACAGAAACACCAATCCCTCCAGCAGATTTACT 993 Query 66362 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC---CAT-CA 66417 || | ||||| ||| || |||||||| || || || ||||||||||| ||| || Sbjct 992 AATGACAGCGCACTCTTTCAATGTATCATAAATCCCTTCAATACTATCATCTTTCATACA 933 Query 66418 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 66477 | | ||| || || ||| || || | | | ||| || ||||| || | || | Sbjct 932 TATCAAG----AAGCAACTACTCAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTG 877 Query 66478 GAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTA 66537 ||||||| || || |||||| | | ||| | | || || |||| || ||| || || | Sbjct 876 GAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGATAAGTCTTAACAGCGGATTCAA 817 Query 66538 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 66597 |||| | ||||| || || | || | ||||| ||| || ||||| |||||||| | Sbjct 816 TATCATGCTTGTGAATCCCAACAGAAACCCTCATTATCATATGTTGAGGCCTTTCAACAA 757 Query 66598 TCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 66657 | | | |||||||| || || | || | ||||| || ||||| || | | Sbjct 756 CAGTCCCATCAACTTTCAACAGATAAGACCTCTCAAGGGTTTTGAATCCAAAGTAATCAT 697 Query 66658 ATGAAAAGTCTCGTTCGTAAATAAT 66682 | ||| || || || ||||| || Sbjct 696 AGTCAAAATCCCGGTCATAAATTAT 672 >seq17517 Length=2996 Score = 241 bits (266), Expect = 2e-58 Identities = 654/985 (66%), Gaps = 26/985 (3%) Strand=Plus/Minus Query 65711 CTCATCTATTACAAA-CATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 65769 || |||| ||||| | | || | ||||||| ||||| || ||||| ||||| ||| Sbjct 1642 CTTATCTCTTACATATCGTGGT-AATGCAATTGATGCAAGGTTACACACGGCAGTCTCTG 1584 Query 65770 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 65829 | | | | || | |||||||||||||| || || |||| || || || | || Sbjct 1583 TTGGACTTGTGTACTCAATTATCTCAGTGCACAGGTTTGATGACTTAATTGTGCCAAGAT 1524 Query 65830 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 65889 |||| || || || || | || || ||||||||| |||| ||| | ||| | ||||||| Sbjct 1523 TTTGCTGGTTGCTTTTCCTATTGCAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTT 1464 Query 65890 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 65949 | ||||| || | | ||| || ||||| |||| ||| | | | || | | Sbjct 1463 CTATCTGTGACTTCAAAATTGCAAACCAGA-GACTTTGTGCTTGA--ACAACCTTCTTTG 1407 Query 65950 TCTTTTC----TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 66005 |||||| |||||| || | || |||| || | || || |||||| || | Sbjct 1406 -CTTTTCCAGCTCTTTCATACTGGGTGTACAGATTCTCATATTCTTCACCCCAA-CAGTC 1349 Query 66006 T-CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACT 66062 | |||| ||||| |||| || || | || ||||| || || | | || | ||| Sbjct 1348 TGCCAAACCAGGGGCCTCATTGGGGCAAAACAGGGACCAATCACCAT--TGCTCCGAACT 1291 Query 66063 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCC 66122 | || |||||| |||||||| | |||||| || ||||||||||| | | ||||| Sbjct 1290 CTTTCCATAAAAAGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCT 1231 Query 66123 TCGTTTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTC 66181 || ||||| || || |||| || || | ||| | | | |||| |||||| ||||| Sbjct 1230 TCCTTTCCGTGGTTTATTTTCAAC-TCCAAGAATTCAAATACATCAGCATGCCATGGTTC 1172 Query 66182 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 66241 |||||||| || | | | || | ||| |||||||||||| | |||| || || Sbjct 1171 CAAGTATACAGCAAAAGCACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGT 1112 Query 66242 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGAT 66301 || ||| | || | || ||||||||| |||||||| || || ||||| || || || Sbjct 1111 GTCATTGAACACACGCAGCATTGGAATGATACCATTAGACGTCCCATTTGTTCCACGAAT 1052 Query 66302 ATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 66361 ||||| ||| ||| | || ||| || || | ||| || || || || |||| Sbjct 1051 GTAGCTGCCATATGCCCTTATGTTATGAACAGAAACACCAATCCCTCCAGCAGATTTACT 992 Query 66362 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC---CAT-CA 66417 || | ||||| ||| || |||||||| || || || ||||||||||| ||| || Sbjct 991 AATGACAGCGCACTCTTTCAATGTATCATAAATCCCTTCAATACTATCATCTTTCATACA 932 Query 66418 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 66477 | | ||| || || ||| || || | | | ||| || ||||| || | || | Sbjct 931 TATCAAG----AAGCAACTACTCAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTG 876 Query 66478 GAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTA 66537 ||||||| || || |||||| | | ||| | | || || |||| || ||| || || | Sbjct 875 GAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGATAAGTCTTAACAGCGGATTCAA 816 Query 66538 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 66597 |||| | ||||| || || | || | ||||| ||| || ||||| |||||||| | Sbjct 815 TATCATGCTTGTGAATCCCAACAGAAACCCTCATTATCATATGTTGAGGCCTTTCAACAA 756 Query 66598 TCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 66657 | | | |||||||| || || | || | ||||| || ||||| || | | Sbjct 755 CAGTCCCATCAACTTTCAACAGATAAGACCTCTCAAGGGTTTTGAATCCAAAGTAATCAT 696 Query 66658 ATGAAAAGTCTCGTTCGTAAATAAT 66682 | ||| || || || ||||| || Sbjct 695 AGTCAAAATCCCGGTCATAAATTAT 671 >seq46009 Length=1074 Score = 181 bits (200), Expect = 1e-40 Identities = 394/582 (68%), Gaps = 12/582 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || ||||| ||||| ||||||||||||||| |||| ||| || || || || || Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || |||||||| || | |||||||||||| ||||||| | || || ||| || || || Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGG-CACAGAAGCTTCCTGAGAAAAA 475 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATG 36333 || ||||| || ||||| ||| ||| ||||| || || || ||||| | Sbjct 474 TATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTTA-- 417 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | ||||| || |||||| || |||||||| | | || || ||||| Sbjct 416 -ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATT 358 Query 36394 AAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATAC 36451 || | || | | ||| ||| |||||||| |||||| || | || | ||||||| Sbjct 357 GAACA-AT-TTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATAC 300 Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 36511 || || |||||||| || || || || || ||||| |||||||| | |||||| | Sbjct 299 ATCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGG 240 Query 36512 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 36571 || || || || | ||| | | | || ||||| || || ||||| ||| | | Sbjct 239 ATTTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTT 180 Query 36572 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA 36631 |||||||| || | || ||| ||| || | || ||| || | | |||| Sbjct 179 GCAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAAGGTTGCCCAA 120 Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 | || | ||| | || | ||| |||||||| | ||||| || || || |||||| Sbjct 119 TGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTT 60 Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 || ||||| | ||||| | | ||| |||||||||| ||| Sbjct 59 TTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAACATA 18 >seq25476 Length=346 Score = 89.7 bits (98), Expect = 7e-13 Identities = 204/300 (68%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 ||||| ||||| || | ||| ||||||| || |||||||||||||| || || | | || Sbjct 5 TCGTTTGAAAAAGTTAATCCAGGCATTAAACCGCGCTTTTTAAGCCAGAAAATTG-CACA 63 Query 36260 -AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--A 36316 || |||||| || || || ||||| || || || |||| | ||| || | | Sbjct 64 GAAACTTCCAGAGAAAAATATACCTTCAACACAAGCGAAAGCAACGATTCTTTCAGCGAA 123 Query 36317 T-AACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 | || ||| || || ||||| || ||||| || || ||||| | ||||| Sbjct 124 TGAATCGG-ACGA--ATCGATCCATTTCAACGCCCATTCAGCTTTCTTAGCGATGCAAGG 180 Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435 ||||| || || || | ||| | | || || || | |||| || | ||| || || Sbjct 181 AATTGTATCAATGGCGTGAAACAAACGATTCTTCTCGGTGTTATCGTTGATATACGTTTC 240 Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 || | ||||||||||| || ||||| || || || || || || || || |||||||| Sbjct 241 GATAAGGAGACTATACATCTCGGAATGGATATTCTCGATCGCGATCTGGAAACCGTAGAA 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657558568461560