Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq17518 244 2e-59 seq17517 244 2e-59 seq46009 199 6e-46 seq25475 158 2e-33 >seq17518 Length=2997 Score = 244 bits (270), Expect = 2e-59 Identities = 601/903 (67%), Gaps = 14/903 (2%) Strand=Plus/Minus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 ||||| |||||||| ||||| ||||||| || || | |||||| || || || || Sbjct 1567 ATTATCTCAGTGCACAGGTTTGATGACTTAATTGTGCCAAGATTTTGCTGGTTGCTTTTC 1508 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 | || || ||||||||| |||| ||| | ||| | |||||||| ||||| || | | | Sbjct 1507 CTATTGCAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAA 1448 Query 79786 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC----TCTTTC 79841 || || ||||| |||| ||| | | | ||| | | |||||| |||||| Sbjct 1447 ATTGCAAACCAGA-GACTTTGTGCTTGA--ACAACCTTCTTTG-CTTTTCCAGCTCTTTC 1392 Query 79842 GTATTG--TGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 || || |||| | | || || | || || |||||| || | || ||||| Sbjct 1391 ATACTGGGTGTACAGATTC--TCATATTCTTCACCCCAACAGTCTGCCAAACCAGGGGCC 1334 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 || | || || | || ||||| || |||| | |||| || |||||| |||||| Sbjct 1333 TCATTGGGGCAAAACAGGGACCAATCACCATTGCTCCGAACTCTTTCCATAAAAAGATCA 1274 Query 79960 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC-TGTATTCTT 80018 || | |||||| || ||||| ||||| | | || || || ||||| || || || Sbjct 1273 GGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATT 1214 Query 80019 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 80078 || || || | ||| | | | ||||| |||||| ||||||||||||| || | | | Sbjct 1213 TTCAAC-TCCAAGAATTCAAATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGC 1155 Query 80079 TCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 80138 || || ||| |||||||||||| | |||| || |||| ||| | || | || Sbjct 1154 ACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAG 1095 Query 80139 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 80198 ||||||||| |||||||| || || ||||| || || || ||||| ||| || | Sbjct 1094 CATTGGAATGATACCATTAGACGTCCCATTTGTTCCACGAATGTAGCTGCCATATGCCCT 1035 Query 80199 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 80258 || ||| || || | ||| || || || || |||| || | ||||| ||| Sbjct 1034 TATGTTATGAACAGAAACACCAATCCCTCCAGCAGATTTACTAATGACAGCGCACTCTTT 975 Query 80259 TAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGA 80318 || |||||||| || || || || |||||||| |||| | | || || ||| Sbjct 974 CAATGTATCATAAATCCCTTCAATACTATCATCTTTCATACATATCAAGAAGCAACTACT 915 Query 80319 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 80378 || || | | | ||| || ||||| || | || |||||||| || || |||||| | Sbjct 914 CAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGAGAAGCATGAGTGAACCATCT 855 Query 80379 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTAC 80438 | ||||| | || || |||| || ||| ||||| ||||| | ||||| || || Sbjct 854 CTGAGACATCAAATGATAAGTCTTAACAGCGGATTCAATATCATGCTTGTGAATCCCAAC 795 Query 80439 CGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 80498 | || | ||||| ||| || ||||| |||||||| | | || | |||||||| Sbjct 794 AGAAACCCTCATTATCATATGTTGAGGCCTTTCAACAACAGTCCCATCAACTTTCAACAG 735 Query 80499 GTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 80558 ||||| | || | ||||| || ||||| || | || ||| || || || ||||| Sbjct 734 ATAAGACCTCTCAAGGGTTTTGAATCCAAAGTAATCATAGTCAAAATCCCGGTCATAAAT 675 Query 80559 AAT 80561 || Sbjct 674 TAT 672 >seq17517 Length=2996 Score = 244 bits (270), Expect = 2e-59 Identities = 601/903 (67%), Gaps = 14/903 (2%) Strand=Plus/Minus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 ||||| |||||||| ||||| ||||||| || || | |||||| || || || || Sbjct 1566 ATTATCTCAGTGCACAGGTTTGATGACTTAATTGTGCCAAGATTTTGCTGGTTGCTTTTC 1507 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 | || || ||||||||| |||| ||| | ||| | |||||||| ||||| || | | | Sbjct 1506 CTATTGCAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAA 1447 Query 79786 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC----TCTTTC 79841 || || ||||| |||| ||| | | | ||| | | |||||| |||||| Sbjct 1446 ATTGCAAACCAGA-GACTTTGTGCTTGA--ACAACCTTCTTTG-CTTTTCCAGCTCTTTC 1391 Query 79842 GTATTG--TGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 || || |||| | | || || | || || |||||| || | || ||||| Sbjct 1390 ATACTGGGTGTACAGATTC--TCATATTCTTCACCCCAACAGTCTGCCAAACCAGGGGCC 1333 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 || | || || | || ||||| || |||| | |||| || |||||| |||||| Sbjct 1332 TCATTGGGGCAAAACAGGGACCAATCACCATTGCTCCGAACTCTTTCCATAAAAAGATCA 1273 Query 79960 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC-TGTATTCTT 80018 || | |||||| || ||||| ||||| | | || || || ||||| || || || Sbjct 1272 GGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATT 1213 Query 80019 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 80078 || || || | ||| | | | ||||| |||||| ||||||||||||| || | | | Sbjct 1212 TTCAAC-TCCAAGAATTCAAATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGC 1154 Query 80079 TCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 80138 || || ||| |||||||||||| | |||| || |||| ||| | || | || Sbjct 1153 ACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAG 1094 Query 80139 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 80198 ||||||||| |||||||| || || ||||| || || || ||||| ||| || | Sbjct 1093 CATTGGAATGATACCATTAGACGTCCCATTTGTTCCACGAATGTAGCTGCCATATGCCCT 1034 Query 80199 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 80258 || ||| || || | ||| || || || || |||| || | ||||| ||| Sbjct 1033 TATGTTATGAACAGAAACACCAATCCCTCCAGCAGATTTACTAATGACAGCGCACTCTTT 974 Query 80259 TAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGA 80318 || |||||||| || || || || |||||||| |||| | | || || ||| Sbjct 973 CAATGTATCATAAATCCCTTCAATACTATCATCTTTCATACATATCAAGAAGCAACTACT 914 Query 80319 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 80378 || || | | | ||| || ||||| || | || |||||||| || || |||||| | Sbjct 913 CAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGAGAAGCATGAGTGAACCATCT 854 Query 80379 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTAC 80438 | ||||| | || || |||| || ||| ||||| ||||| | ||||| || || Sbjct 853 CTGAGACATCAAATGATAAGTCTTAACAGCGGATTCAATATCATGCTTGTGAATCCCAAC 794 Query 80439 CGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 80498 | || | ||||| ||| || ||||| |||||||| | | || | |||||||| Sbjct 793 AGAAACCCTCATTATCATATGTTGAGGCCTTTCAACAACAGTCCCATCAACTTTCAACAG 734 Query 80499 GTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 80558 ||||| | || | ||||| || ||||| || | || ||| || || || ||||| Sbjct 733 ATAAGACCTCTCAAGGGTTTTGAATCCAAAGTAATCATAGTCAAAATCCCGGTCATAAAT 674 Query 80559 AAT 80561 || Sbjct 673 TAT 671 >seq46009 Length=1074 Score = 199 bits (220), Expect = 6e-46 Identities = 398/582 (68%), Gaps = 12/582 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| ||||| ||||||||||||||| |||||||| || || || || || Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || |||||||| || | |||||||||||| ||||||| | || || || || || || Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGG-CACAGAAGCTTCCTGAGAAAAA 475 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATG 50135 || ||||| || ||||| ||||||| ||||| || || ||| |||| | Sbjct 474 TATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTTA-- 417 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| | ||||| || |||||| || |||||||| | |||| || ||||| Sbjct 416 -ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATT 358 Query 50196 AAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 || | || | | ||| ||| |||||||| ||| || || | || | ||||||| Sbjct 357 GAACA-AT-TTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATAC 300 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 || || |||||||| || || || || |||||||| |||||||| | |||||| | Sbjct 299 ATCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGG 240 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 || || || || | ||| | | |||| ||||| || || ||||| ||| | | Sbjct 239 ATTTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTT 180 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA 50433 |||||||| || | || ||| ||| || || || ||| | || | | |||| Sbjct 179 GCAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAAGGTTGCCCAA 120 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 | || | ||| | || | |||||||||||| | ||||| || || || |||||| Sbjct 119 TGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTT 60 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 || ||||| | ||||| | | ||| | ||||| || ||| Sbjct 59 TTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAACATA 18 >seq25475 Length=2349 Score = 158 bits (174), Expect = 2e-33 Identities = 571/878 (65%), Gaps = 24/878 (3%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || || || || || || || || ||||| || || || || | | || || Sbjct 1242 TTCTGATACTCTCCAACGCGCTTCTCAAAAAAGTTGGTCTTCCCCTGAAGCGAAATCAGA 1301 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||||||||| || ||||||||||| || | | || | || | | Sbjct 1302 TCCATCCAATCAAACGGATTCGTCACATTATAAATCTTCCCACACCCAAGCTCCCCCAAC 1361 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA-- 49846 || ||||| || ||| | || ||||| || |||||| |||| ||||| || | | Sbjct 1362 AACCTATCAGCAACATACTCAATATACGTACTCATCAAATCACCGTTCATCCCAACCAAC 1421 Query 49847 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904 | || ||||| || |||| | ||| || || || ||||| || | Sbjct 1422 GCGCAA--GGAAGCGCGTCGCAC--ACAAACTCCCTCTCGATCTCAACCGCGTCACGCAC 1477 Query 49905 AATAGATCTA-ACGGTTTCTTCACTCGGTGGATGCAATAA--ATGTTTAAACATCAAACA 49961 ||| | ||| ||| |||||||| || | ||| ||| |||| |||||| Sbjct 1478 AATCG-TCTGCACGCGCTCTTCACTGAGTTTCTTTTTTAATAATGAGTAAAG--CAAACA 1534 Query 49962 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 50021 ||||||||||| || ||||| ||||| | ||| || ||||| ||||| || | ||| Sbjct 1535 AGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTTAATCC 1594 Query 50022 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAATGACCCAGAAAAGAAGA 50080 ||||||| || || ||||| ||||| || || | || ||| ||| ||||| || | Sbjct 1595 TGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCT-GAAAAAAATA 1653 Query 50081 TTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC--ATGTAT 50138 | ||||| || ||||| || |||| ||||| | | || | | | || || Sbjct 1654 TACCTTCAACGCAAGCAAATGCTACAATCCTCTCAGCGAA--TGTATCAGACGAATCGAT 1711 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| || ||||| || ||||| || | ||| || ||||| || || || | ||| Sbjct 1712 CCATTTCATCGCCCATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCGCGTGAAA 1771 Query 50199 GAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 | | || || || | || |||||| | ||| | |||| | |||| |||||| Sbjct 1772 CAAACGATTCTTCTC--TGCTGAATCTTTGATATACGCCTCGAGGAGAAGAGAATACATC 1829 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || ||||| || || || || || ||||| ||||||||||| | ||||| | || Sbjct 1830 TCTGAATGGATATTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCTGAGATT 1889 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || | |||| | |||| | | || | ||| || || |||||||| ||| ||| Sbjct 1890 TGGATTTCTTTCATGAATCTTCCGGCGAGATTCTCCAAGACGATTCCGTCGGAGGCGGCA 1949 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCA 50436 || || || | ||||| | ||| || || | || || |||| | Sbjct 1950 AAGAAGGCAAGGACATGCGAAACAAAGTGGCGCTCACCGTCGGTGAGGGAGATCCAGTGC 2009 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 | | |||||| || | ||| |||||||| | ||||| || || || || || || || Sbjct 2010 TGGTTATCTTGGGAGAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTCTTG 2069 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||||| | |||||| | | | |||||||||||||| || Sbjct 2070 TACATTTCCCAGATTTTAGGGTATTGGATTGGGAACAT 2107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717598484620760