Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq46009 138 1e-27 seq25475 105 6e-18 seq25477 91.5 1e-13 >seq46009 Length=1074 Score = 138 bits (152), Expect = 1e-27 Identities = 378/576 (66%), Gaps = 5/576 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| ||||| ||||| |||||| || ||||| ||||| ||||| | Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 |||||||| | ||||| ||||| | ||| ||||| ||| || || || || ||| Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAAT 474 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || || ||||| ||||| | | | | || |||| || | |||| Sbjct 473 ATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTT---A 417 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||| | |||||||||| || || || | || | ||||||| ||||| Sbjct 416 ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATTG 357 Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 || || | | |||||| | | | ||| ||||| || | || || |||||||| Sbjct 356 AACAATTTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATACATC 297 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||||| || || || || || ||||||||||| || || || | ||| |||| | Sbjct 296 TCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGATT 237 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || || || ||| ||| | |||||||| || ||| || |||||| | |||| Sbjct 236 TGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTTGCA 177 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT-TGTTGAGTTTTTTCCAATC 14350 ||||| || | | || | || |||| | ||| | || || || ||||| Sbjct 176 AAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAAG-GTTGCCCAATG 118 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 || ||| | || ||||||||||| || | ||||| ||||| || |||| ||||| Sbjct 117 ATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTTTT 58 Query 14411 ATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 ||||| |||| | || ||| ||| || ||||| Sbjct 57 GTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAA 22 >seq25475 Length=2349 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| || ||||| |||||||| || || || | |||||| ||||||||||| ||| Sbjct 1530 AAACAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTT 1589 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 ||||||||||| || || |||||||| | ||| || || ||| || || ||||| Sbjct 1590 AATCCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAA 1649 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTA 14016 ||||| || ||||| |||||| |||| Sbjct 1650 AATATACCTTCAACGCAAGCAAATGCTA 1677 >seq25477 Length=343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 ||| || | ||| | || ||||||||||||||||| |||| |||||||| ||||| Sbjct 343 ATACTCTCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCTTGAAGTGATATCAACTCCAT 284 Query 13646 AAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCT 13705 ||||||| ||||| | || | ||||| |||| || | ||| | | ||||| Sbjct 283 CCAATCAAAAGGATTCTCAGCATTATAGACTTTCCCACACCCAACTTCACACAACAATCT 224 Query 13706 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACC 13753 ||| |||| |||||||||||| | | |||||| || | ||||| || Sbjct 223 ATCTGCAACAAACTCAATATACTTACTCATTAACTCTCCGTTCATCCC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479280299840600