Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq46009 147 2e-30 seq25475 109 5e-19 seq25477 87.8 2e-12 >seq46009 Length=1074 Score = 147 bits (162), Expect = 2e-30 Identities = 380/576 (66%), Gaps = 5/576 (1%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||||||||| ||||| ||||| |||||| || ||||| ||||| ||||| | Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 |||||||| | ||||| ||||| | ||| ||||| ||| ||| ||| || || ||| Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAAT 474 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 || || ||||| ||||| | | || | || |||| || | |||| Sbjct 473 ATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTT---A 417 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 ||||| | |||||||||| || || || | || | |||| ||||||||| Sbjct 416 ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATTG 357 Query 13900 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 || || | | |||||| | | | ||| ||||| || | || || |||||||| Sbjct 356 AACAATTTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATACATC 297 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 ||||| || || || || || ||||||||||| || || || | ||| || | | Sbjct 296 TCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGATT 237 Query 14020 TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 || || || ||| ||| | ||||| || || ||| || |||||| | |||| Sbjct 236 TGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTTGCA 177 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT-TGTTGAGTTTTTTCCAATC 14138 ||||| || | | || | || |||| | ||| | || || || ||||| Sbjct 176 AAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAAG-GTTGCCCAATG 118 Query 14139 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14198 || ||| | || ||||||||||| || | ||||| ||||| || |||| ||||| Sbjct 117 ATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTTTT 58 Query 14199 ATACATTACCCATATTTCTTTATATAATATAGGAAA 14234 ||||| |||| | || ||| ||| || ||||| Sbjct 57 GTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAA 22 >seq25475 Length=2349 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||| || ||||| |||||||| || || || | |||||| ||||||||||| ||| Sbjct 1530 AAACAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTT 1589 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||||||||| || || |||||||| | ||| || || ||| ||| || ||||| Sbjct 1590 AATCCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAA 1649 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTA 13804 ||||| || ||||| |||||| |||| Sbjct 1650 AATATACCTTCAACGCAAGCAAATGCTA 1677 >seq25477 Length=343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 13374 ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13433 ||| || | ||| | || ||||| ||||||||||| |||| |||||||| ||||| Sbjct 343 ATACTCTCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCTTGAAGTGATATCAACTCCAT 284 Query 13434 AAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCT 13493 |||| || ||||| | || | ||||| |||| || | ||| | || ||||| Sbjct 283 CCAATCAAAAGGATTCTCAGCATTATAGACTTTCCCACACCCAACTTCACACAACAATCT 224 Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACC 13541 ||| |||| |||||||||||| | | |||||| || | ||||| || Sbjct 223 ATCTGCAACAAACTCAATATACTTACTCATTAACTCTCCGTTCATCCC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478142162984760