Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq56145 116 3e-21 seq56144 116 3e-21 seq56143 107 1e-18 seq2804 87.8 1e-12 >seq56145 Length=1576 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | |||||||||| ||| ||| || || | ||| ||||| | Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCA 811 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||| || || ||||| ||||||||||||||||| | || Sbjct 812 AGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGA 871 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | | || || || | | |||||| | || || Sbjct 872 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACC 931 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||||||||| |||||||| || |||||||| Sbjct 932 TCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 >seq56144 Length=1637 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | |||||||||| ||| ||| || || | ||| ||||| | Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCA 811 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||| || || ||||| ||||||||||||||||| | || Sbjct 812 AGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGA 871 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | | || || || | | |||||| | || || Sbjct 872 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACC 931 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||||||||| |||||||| || |||||||| Sbjct 932 TCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| |||| | || || |||| ||||| ||||| |||||||| Sbjct 1016 TCCTTCTGTATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCCAACTGTTTTCCGGCAAAG 1075 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| ||||| ||||||| || | || || || || ||| |||| || || Sbjct 1076 ATCAACCGCTGCTGATCGGGAGGAATTCCCTCCTTGTCTTGAATCTTAGCTTTCACGTTG 1135 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | |||||| | || || |||| ||||| ||||| |||||||| ||||||||| Sbjct 1136 TCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATGGTTTTACCGGTTAGGGTTTTCACA 1195 Query 43099 AAAATTTGCAT 43109 || |||||||| Sbjct 1196 AAGATTTGCAT 1206 >seq56143 Length=1408 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | |||||||||| ||| ||| || || | ||| ||||| | Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCA 811 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||| || || ||||| ||||||||||||||||| | || Sbjct 812 AGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGA 871 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | | || || || | | |||||| | || || Sbjct 872 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACC 931 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| ||||| ||||| || || |||||||| Sbjct 932 TCCAGTGTGATGGTTTTTCCAGTTAGCGTTTTGACGAAGATTTGCAT 978 >seq2804 Length=712 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||||| | ||||| ||| ||| || || | |||||||| | Sbjct 711 CCACCACGAAGACGCAACACAAGATGGAGAGTTGACTCTTTCTGAATGTTGTAATCTGCT 652 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || || | |||||||| ||||| || | | |||||| |||| || Sbjct 651 AAAGTTCTGCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 592 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || ||||| || |||| || ||||||| || ||| || || ||| ||||| Sbjct 591 ATGCCCTCTTTATC-CTGAATCTTGGCTTTGACATTGTCAATGGTATCAG-AGCTCTCGA 534 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || ||||| || |||||||||||||| |||||||| Sbjct 533 CCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381022589298222