Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq17518 219 6e-52 seq17517 219 6e-52 seq46009 187 3e-42 seq25476 98.7 1e-15 >seq17518 Length=2997 Score = 219 bits (242), Expect = 6e-52 Identities = 634/962 (66%), Gaps = 24/962 (2%) Strand=Plus/Minus Query 71695 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATT 71754 || |||| ||||| || ||||| ||||| ||| | | | | || | || || Sbjct 1621 AATGCAATTGATGCAAGGTTACACACGGCAGTCTCTGTTGGACTTGTGTACTCAATTATC 1562 Query 71755 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 71814 |||||||| || || |||| || || || | |||||| || || || || | || Sbjct 1561 TCAGTGCACAGGTTTGATGACTTAATTGTGCCAAGATTTTGCTGGTTGCTTTTCCTATTG 1502 Query 71815 CACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 || ||||||||| |||| || | ||| | |||||||| ||||| || | | ||| || Sbjct 1501 CAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAAATTGCA 1442 Query 71875 TTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC----TCTTTCGTATTG 71930 ||||| |||| ||| | | | ||| | | |||||| |||||| || || Sbjct 1441 AACCAGA-GACTTTGTGCTTGA--ACAACCTTCTTTG-CTTTTCCAGCTCTTTCATACTG 1386 Query 71931 --TGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATT 71987 |||| | | || || | || || |||||| || | | | || ||||| ||||| Sbjct 1385 GGTGTACAGATTC--TCATATTCTTCACCCCAA-CAGTCTGCCAAACCAGGGGCCTCATT 1329 Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 || || | || ||||| || |||| |||| || |||||| |||||||| | Sbjct 1328 GGGGCAAAACAGGGACCAATCACCATTGCTCCGAACTCTTTCCATAAAAAGATCAGGCAC 1269 Query 72048 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC-TGTATTCTTTTTAA 72106 |||||| || ||||| ||||| | | || || || ||||| || || |||| || Sbjct 1268 CCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATTTTCAA 1209 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 || | ||| | | | ||||| |||||| ||||||||||||| || | | | || Sbjct 1208 C-TCCAAGAATTCAAATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGCACCTT 1150 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | ||| |||||||||||| | |||| || |||| ||| | || | || ||||| Sbjct 1149 TTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAGCATTG 1090 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 72286 |||| |||||||| || | ||||| || || || ||||| ||| || | || | Sbjct 1089 GAATGATACCATTAGACGTCCCATTTGTTCCACGAATGTAGCTGCCATATGCCCTTATGT 1030 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 | || || | ||| || || || || |||| || | ||||| ||| || | Sbjct 1029 TATGAACAGAAACACCAATCCCTCCAGCAGATTTACTAATGACAGCGCACTCTTTCAATG 970 Query 72347 TATCATAGATGCCCTCTATACTATCATC---CAT-CATGTTAAGTAGAAAACAGCTAGAC 72402 ||||||| || || || ||||||||||| ||| ||| | ||| || || ||| | Sbjct 969 TATCATAAATCCCTTCAATACTATCATCTTTCATACATATCAAG----AAGCAACTACTC 914 Query 72403 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 72462 | || | | | ||| || ||||| || | || |||||||| || || |||||| | Sbjct 913 AACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGAGAAGCATGAGTGAACCATCTC 854 Query 72463 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACC 72522 | ||||| | || || |||| || ||| ||||| ||||| | || || || || Sbjct 853 TGAGACATCAAATGATAAGTCTTAACAGCGGATTCAATATCATGCTTGTGAATCCCAACA 794 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582 | || | ||||| |||||| ||||| |||||||| | | || | |||||||| Sbjct 793 GAAACCCTCATTATCATATGTTGAGGCCTTTCAACAACAGTCCCATCAACTTTCAACAGA 734 Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642 || || | || | ||||| || ||||| || | || ||| || || || ||||| Sbjct 733 TAAGACCTCTCAAGGGTTTTGAATCCAAAGTAATCATAGTCAAAATCCCGGTCATAAATT 674 Query 72643 AT 72644 || Sbjct 673 AT 672 >seq17517 Length=2996 Score = 219 bits (242), Expect = 6e-52 Identities = 634/962 (66%), Gaps = 24/962 (2%) Strand=Plus/Minus Query 71695 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATT 71754 || |||| ||||| || ||||| ||||| ||| | | | | || | || || Sbjct 1620 AATGCAATTGATGCAAGGTTACACACGGCAGTCTCTGTTGGACTTGTGTACTCAATTATC 1561 Query 71755 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 71814 |||||||| || || |||| || || || | |||||| || || || || | || Sbjct 1560 TCAGTGCACAGGTTTGATGACTTAATTGTGCCAAGATTTTGCTGGTTGCTTTTCCTATTG 1501 Query 71815 CACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 || ||||||||| |||| || | ||| | |||||||| ||||| || | | ||| || Sbjct 1500 CAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAAATTGCA 1441 Query 71875 TTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC----TCTTTCGTATTG 71930 ||||| |||| ||| | | | ||| | | |||||| |||||| || || Sbjct 1440 AACCAGA-GACTTTGTGCTTGA--ACAACCTTCTTTG-CTTTTCCAGCTCTTTCATACTG 1385 Query 71931 --TGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATT 71987 |||| | | || || | || || |||||| || | | | || ||||| ||||| Sbjct 1384 GGTGTACAGATTC--TCATATTCTTCACCCCAA-CAGTCTGCCAAACCAGGGGCCTCATT 1328 Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 || || | || ||||| || |||| |||| || |||||| |||||||| | Sbjct 1327 GGGGCAAAACAGGGACCAATCACCATTGCTCCGAACTCTTTCCATAAAAAGATCAGGCAC 1268 Query 72048 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC-TGTATTCTTTTTAA 72106 |||||| || ||||| ||||| | | || || || ||||| || || |||| || Sbjct 1267 CCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATTTTCAA 1208 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 || | ||| | | | ||||| |||||| ||||||||||||| || | | | || Sbjct 1207 C-TCCAAGAATTCAAATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGCACCTT 1149 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | ||| |||||||||||| | |||| || |||| ||| | || | || ||||| Sbjct 1148 TTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAGCATTG 1089 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 72286 |||| |||||||| || | ||||| || || || ||||| ||| || | || | Sbjct 1088 GAATGATACCATTAGACGTCCCATTTGTTCCACGAATGTAGCTGCCATATGCCCTTATGT 1029 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 | || || | ||| || || || || |||| || | ||||| ||| || | Sbjct 1028 TATGAACAGAAACACCAATCCCTCCAGCAGATTTACTAATGACAGCGCACTCTTTCAATG 969 Query 72347 TATCATAGATGCCCTCTATACTATCATC---CAT-CATGTTAAGTAGAAAACAGCTAGAC 72402 ||||||| || || || ||||||||||| ||| ||| | ||| || || ||| | Sbjct 968 TATCATAAATCCCTTCAATACTATCATCTTTCATACATATCAAG----AAGCAACTACTC 913 Query 72403 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 72462 | || | | | ||| || ||||| || | || |||||||| || || |||||| | Sbjct 912 AACTGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGAGAAGCATGAGTGAACCATCTC 853 Query 72463 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACC 72522 | ||||| | || || |||| || ||| ||||| ||||| | || || || || Sbjct 852 TGAGACATCAAATGATAAGTCTTAACAGCGGATTCAATATCATGCTTGTGAATCCCAACA 793 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582 | || | ||||| |||||| ||||| |||||||| | | || | |||||||| Sbjct 792 GAAACCCTCATTATCATATGTTGAGGCCTTTCAACAACAGTCCCATCAACTTTCAACAGA 733 Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642 || || | || | ||||| || ||||| || | || ||| || || || ||||| Sbjct 732 TAAGACCTCTCAAGGGTTTTGAATCCAAAGTAATCATAGTCAAAATCCCGGTCATAAATT 673 Query 72643 AT 72644 || Sbjct 672 AT 671 >seq46009 Length=1074 Score = 187 bits (206), Expect = 3e-42 Identities = 395/582 (68%), Gaps = 12/582 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || ||||| ||||| |||||||| |||||| |||| ||| || || || || || Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || |||||||| || | |||||||||||| ||||| | | || || ||| || || || Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATAT-GGCACAGAAGCTTCCTGAGAAAAA 475 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATG 42240 || ||||| || ||||| ||| ||| ||||| || || || ||||| | Sbjct 474 TATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTTA-- 417 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | ||||| || |||||| || |||||||| | |||| || ||||| Sbjct 416 -ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATT 358 Query 42301 AAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCGATCAAAAGACTATAC 42358 || | || | | ||| ||| |||||||| |||||| || | || | ||||||| Sbjct 357 GAACA-AT-TTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATAC 300 Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418 || || |||||||| || || || || |||||||| |||||||| | ||||| | Sbjct 299 ATCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGG 240 Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | || || || | ||| | | |||| ||||| || || ||||| ||| | | Sbjct 239 ATTTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTT 180 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAA 42538 |||||||| || | || ||| ||| || | || ||| || || | |||| Sbjct 179 GCAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAAGGTTGCCCAA 120 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 | || | ||| | || | |||||||||||| | ||||| || ||||| |||||| Sbjct 119 TGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTT 60 Query 42599 TTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 || ||||| | ||||| | | ||| ||||||| || ||| Sbjct 59 TTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAACATA 18 >seq25476 Length=346 Score = 98.7 bits (108), Expect = 1e-15 Identities = 206/300 (69%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 ||||| ||||| || | ||| ||||||| || |||||||||||||| || || | | || Sbjct 5 TCGTTTGAAAAAGTTAATCCAGGCATTAAACCGCGCTTTTTAAGCCAGAAAATTG-CACA 63 Query 42167 -AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--A 42223 || |||||| || || || ||||| || || || |||| | ||| || | | Sbjct 64 GAAACTTCCAGAGAAAAATATACCTTCAACACAAGCGAAAGCAACGATTCTTTCAGCGAA 123 Query 42224 T-AACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | || ||| || || ||||| || ||||| || || ||||| | ||||| Sbjct 124 TGAATCGG-ACGA--ATCGATCCATTTCAACGCCCATTCAGCTTTCTTAGCGATGCAAGG 180 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 || || || ||||| | ||| | | || || || | |||| || | ||| || || Sbjct 181 AATTGTATCAATGGCGTGAAACAAACGATTCTTCTCGGTGTTATCGTTGATATACGTTTC 240 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 ||| | ||||||||||| || ||||| || || || || || ||||| || |||||||| Sbjct 241 GATAAGGAGACTATACATCTCGGAATGGATATTCTCGATCGCGATCTGGAAACCGTAGAA 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670512867730840